Using Optical Fractionator to count offline after an SRS Image Stack acquisition

Purpose

Use this modified Optical Fractionator workflow to count objects in image stacks acquired with the SRS image-stack series workflow in Stereo Investigator.

If you are counting image stacks acquired in a systematic random sampling (SRS) manner using another microscope system (i.e., not an MBF Bioscience system), see Using Optical Fractionator with external image sources .

Procedure

  1. Click the Optical Fractionator workflow button on the Probes ribbon.

    If you haven't used the workflow recently, find the Optical Fractionator workflow button in the Number drop-down menu in the All Probes section of the Probes ribbon.

  2. In the dialog box that opens, Select Load subject data from existing file and click Browse to locate the data file.

  3. The Open dialog box is displayed. Select the desired data file, uncheck Load Image with Data File (recommended for faster performance), and click Open.

  4. Click OK to close the Optical Fractionator Workflow dialog box. The workflow panel is displayed.

  5. Follow the steps in the workflow.

Using the workflow

A few tips

You can count objects on another system using a desktop copy of Stereo Investigator or you can purchase a mobile USB license that allows one person to use Stereo Investigator on your microscope system while another person is using your Stereo Investigator license.

Try to avoid using the Image Adjustment window – making changes to each stack is time consuming. If you need to use it, remember to save every few sites (otherwise, the software will keep unsaved images open in memory, slowing the system down if you have many sites).

If you are struggling with the automatic zoom feature (that is, you seem to have to zoom out at each site to see the counting frame), contact us.