Chemotaxis

Distance to label center

Refers to the minimum, maximum, or mean distance of all worms to a region label center point.

Speed to label center

Refers to the maiming, maximum, or mean speed of all worms toward a region label center.

Speed refers to the distance per second covered by the worm along its central axis.

  • If the sign is positive, the worm is moving forward (head direction).
  • If the sign is negative, the worm is moving backward (tail direction).

The speed is based on the position of the mid-point along the central axis. Image noise may affect speed measurements.

  • Use Moving Average Speed or Smoothed Speed to reduce the effects of noise.

Moving average speed refers to the speed for a particular worm, averaged across a number of frames. The number of frames is known as the size of the moving window.

Using a moving average reduces the effects of noise, and also results in a latency in speed measurement.

  • To adjust the number of frames, enter a different Average across value in the Moving Average Speed parameters.

Smoothed speed refers to the Moving average speed smoothed over a user-defined frame span using locally weighted polynomial regression[1].

This method can remove outliers caused by worm model fitting error.

  • To adjust the span, enter a different Span value in the Smoothed Speed parameters.

 

To apply changes to the display type (histogram or xy plot) or the operation (mean, min, or max), click the Refresh Data button.