NeuroInfo^® User guide

Version 2023

About NeuroInfo software

NeuroInfo enables whole-brain investigation of circuits, neuronal populations, and biochemical-marker expression using widely accepted brain atlases for anatomic reference. Visualize 2D and 3D brain microscopy images, align/register to a standardized reference brain, visualize and quantitate brain region delineations.

What's new

See the What's new page or review the release notes.

Getting Started

• See an overview of the NeuroInfo software interface/workspace

• Create a 3D brain reconstruction from 2D serial-section microscopy image data using the Assemble Serial Sections workflow.

• Map the number and location of cells using the cell detection workflow.

• Identify brain regions in images of your samples by comparison to a public brain atlas. Start by aligning (registering) your 3D brain images to a reference-brain atlas, using either:

  • Register Sections for image reconstructions derived from serially sectioned tissue

  • Register Volume for brain images from tissue that was intact, i.e., not sectioned or sliced prior to imaging

• Once registration is complete, you can map data, such as markers for detected cells and contours that designate specific brain regions to obtain quantitative information about where the data are located.

NeuroInfo webinars on YouTube