Automatic Contouring

Trace contours on live or acquired images interactively and quickly.

Although Automatic Contouring is a powerful and intelligent command, we recommend that you examine the traced contour and refine the contour(s) manually.

Using Automatic Contouring

1. An image is open. Place a reference point.
2. Zoom to a level appropriate for tracing your contour.
3. Right-click in the work area and select Automatic Contouring. Neurolucida opens the Automatic Contouring panel .
   
4. Optional Click Show Advanced Settings .
   1. Click Start Initialization. Initialization enables you to guide Neurolucida in placing the first contour points.
   2. Place two contour points manually. Neurolucida highlights the segments between the contour points in blue and suggests a path for the next contour points represented by orange circles .
   3. Click Stop Initialization.
      • If you are not satisfied with the path suggested, click Restart Initialization.
      See all Advanced Settings

      Global Options

      Point Density

      Controls the frequency of the point placement during tracing. A lower setting means fewer points placed.

      Auto-close within

      Closes the current contour as soon as an added point comes within the set number of pixels of the contour start. 0 turns disables this feature. We recommend starting with a value of 30.

      Deletion prompt

      Controls a message box that Neurolucida displays when the number of points to be deleted exceeds the value set for the prompt. This helps protect you against accidental deletion of a large contour.

      Intensity, Texture, and Hue

      Each of these three methods has three controls:

      Force

      Controls the amount of force that a particular method has on each point placed. A lower Force value tends to move on more of a straight line.

      Sensitivity

      Controls when automatic contouring needs to stop and ask you for help—you will need to examine the tracing and make some decisions. A lower Sensitivity value requires less interaction, but it is more likely to wander into undesirable image areas.

      Sample Width

      Defines a region on either side of the contour which is sampled during contouring for making point-placement decisions. A larger Sample Width samples farther away from the contour.

      Which control should I use? It is possible to use multiple methods simultaneously. However, you may get the best results by using one method at a time. To disable a method, set its forces to 0.

      Presets

      The presets are good starting points to create your own settings. Experiment with these presets—they will give you a sense of how the different parameters and options affect the results.

      • To use the presets, click the Presets button and select a preset from the list
5. In the Control area, click the Forward arrow . Neurolucida starts the automatic contouring process.
   • To interrupt automatic contouring, click the Pause icon .
   • To delete points, click the Back arrow or use CTRL-Z.
   • To resume manual tracing, click the Pause icon then place contour points manually.

 

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