Open topic with navigation

Splicing Processes

What is the purpose of splicing?

When tracing in serial sections, two processes may appear to exit a section close together. But when tracing in the next section, it becomes apparent that the two processes are actually one continuous process with a short segment in the second section.

ClosedExample

 

  • A look at section B only suggests a small process.
  • A look at section A only suggests two different processes rather than one process that crosses sections.

Splicing allows for joining two processes after they have been completely traced in two sections as separate processes.

How do I splice?

  1. Click Edit>Select Objects and click a traced fragment to select it.
  2. Hover over the end of a traced process, right-click and select Splice. A line extends from the end to the cursor.
  3. Move the cursor over the end you want to join the fragment to. A circle appears at the end.
  4. Click to splice the two fragments. You are prompted to "adjust the Z values of the spliced fragment to match those of the selected neuron."
    • Click No to avoid introducing distortion into the Z position of the newly joined fragment.

Splicing and directionality

Neurolucida marks the first point placed to trace the process as the beginning of the process.

To determine whether a point is a beginning or an ending, click Edit>Select Objects, click the traced process to select it, and hover over the point.

To change a point from an ending to a beginning, right-click the ending and select Change Ending Type. Select Origin Ending.

ClosedSplicing Ending/Beginning

  1. Click Edit>Select Objects and click process α to select it.
  2. Hover over the ending of process α until the letter E displays (to indicate an ending).
  3. Right-click over the E and select Splice. A line appears, connecting the ending of process α to the cursor.
    • Click the beginning of process β to splice the processes. You are prompted to "adjust the Z values of the spliced fragment to match those of the selected neuron."
      • If you are confident that process β was recorded at the correct Z depth, select No. The splicing segment traverses the Z depth between the two fragments. Use the Orthogonal View to check that the jump is not too abrupt.
      • If you have not set the Z depth of process β, select Yes. The beginning of process β is assigned the same Z depth as the ending of process α.
ClosedSplicing Ending/Ending

  1. Click Edit>Select Objects and click process α to select it.
  2. Hover over the ending of process α until the letter E displays (to indicate an ending).
  3. Right-click over the E and select Splice. A line appears, connecting the ending of process α to the cursor.
    • Click the ending of process β to splice the processes. The beginning of the more distal segment (β) is automatically changed to a Generated Ending (GE).

Neurolucida automatically renumbers the branch order of branches on the processes spliced together.

ClosedSplicing Beginning/Beginning

Attempting to splice a beginning to a beginning results in an error message with instructions to flip the orientation of one of the process fragments.

To flip the orientation:

  1. Click Edit>Select Objects and click the process to flip to select it.
  2. Right-click and select Change Ending Type.
  3. Select Origin Ending). The branches are automatically renumbered.

 

Neurolucida 11 | MBF Bioscience Support Center | Downloads