Markers must be placed in the 2D window (see Placing markers (2D)).
Click the marker button in the 3D environment to display the editing options.
To see all the options, select at least one marker:
The minimal display size for a marker is 1px.
Selected markers are displayed within a semi-transparent sphere.
Selected markers are displayed within a semi-transparent sphere.
Press the Delete key or use the Remove button in the Edit Markers panel. You can't undo this action.
See About markers and Editing markers (2D)