ScanImage^®Citations

Acerbo, E., Botzanowski, B., Dellavale, D., Stern, M. A., Cole, E. R., Gutekunst, C.-A., Gantt, M. L., Steiner, M., Missey, F., & Cassara, A. (n.d.). Non-Invasive Deep-Brain Stimulation Using Pulsed Temporally Interfering Electric Fields for Epilepsy. Retrieved October 24, 2024, from https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4849682

Aggarwal, A., Chan, J., Waring, A. K., Negrean, A., Marvin, J. S., Podgorski, K., & Looger, L. L. (2024). Check for updates Chapter. New Technologies for Glutamate Interaction: Neurons and Glia, 1.

Allen, C. H. (2024). Development and Application of a Multimodal Coherent Raman Scattering Microscope [PhD Thesis, Carleton University]. https://repository.library.carleton.ca/concern/etds/np193b30p

Batalov, I., Filteau, J. R., Francis, R. M., Jaindl, G., Orr, L., Rapp, T. L., Yang, S., Filteau, J. A., Xie, W., & Bretherton, R. C. (2024). Grayscale 4D Biomaterial Customization at High Resolution and Scale. bioRxiv, 2024–01.

Bowen, Z., De Zoysa, D., Shilling-Scrivo, K., Aghayee, S., Di Salvo, G., Smirnov, A., Kanold, P. O., & Losert, W. (2024). NeuroART: Real-Time Analysis and Targeting of Neuronal Population Activity during Calcium Imaging for Informed Closed-Loop Experiments. Eneuro, 11(10). https://www.eneuro.org/content/11/10/ENEURO.0079-24.2024.abstract

Brown, T. C., Crouse, E. C., Attaway, C. A., Oakes, D. K., Minton, S. W., Borghuis, B. G., & McGee, A. W. (2024). Microglia are dispensable for experience-dependent refinement of mouse visual circuitry. Nature Neuroscience, 27(8), 1462–1467.

Chen, C., & Song, S. (2024). Distinct neuron types contribute to hybrid auditory spatial coding. Journal of Neuroscience. https://www.jneurosci.org/content/early/2024/09/11/JNEUROSCI.0159-24.2024.abstract

Cheng, Y.-T., Lett, K. M., Xu, C., & Schaffer, C. B. (2024). Three-photon excited fluorescence microscopy enables imaging of blood flow, neural structure and inflammatory response deep into mouse spinal cord in vivo. bioRxiv. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11014502/

Chong, S. P., & Török, P. (2024). Influence of laser pulse shape and cleanliness on two-photon microscopy. Optics Continuum, 3(4), 552–564.

Dias, R. F., Rajan, R., Baeta, M., Belbut, B., Marques, T., & Petreanu, L. (2024). Visual experience reduces the spatial redundancy between cortical feedback inputs and primary visual cortex neurons. Neuron, 112(19), 3329–3342.

Dibaj, P., Safavi-Abbasi, S., & Asadollahi, E. (2024). In vivo spectrally unmixed multi-photon imaging of longitudinal axon-glia changes in injured spinal white matter. Neuroscience Letters, 841, 137959.

Dong, C., Gowrishankar, R., Jin, Y., He, X. J., Gupta, A., Wang, H., Sayar-Atasoy, N., Flores, R. J., Mahe, K., & Tjahjono, N. (2024). Unlocking opioid neuropeptide dynamics with genetically encoded biosensors. Nature Neuroscience, 27(9), 1844–1857.

Farinella, D. M., Stanek, S., Jayakumar, H., Newman, Z. L., Gable, J., Leger, J., & Kerlin, A. (2024). Two-dimensional electro-optical multiphoton microscopy. Neurophotonics, 11(2), 025005–025005.

Farrants, H., Shuai, Y., Lemon, W. C., Monroy Hernandez, C., Zhang, D., Yang, S., Patel, R., Qiao, G., Frei, M. S., & Plutkis, S. E. (2024). A modular chemigenetic calcium indicator for multiplexed in vivo functional imaging. Nature Methods, 1–10.

Fernández, A., Classen, A., Josyula, N., Florence, J. T., Sokolov, A. V., Scully, M. O., Straight, P., & Verhoef, A. J. (2024). Simultaneous Two-and Three-Photon Deep Imaging of Autofluorescence in Bacterial Communities. Sensors, 24(2), 667.

Fernholz, M. H., Guggiana Nilo, D. A., Bonhoeffer, T., & Kist, A. M. (2024). DeepD3, an open framework for automated quantification of dendritic spines. PLOS Computational Biology, 20(2), e1011774.

Ford, A. N., Czarny, J. E., Rogalla, M. M., Quass, G. L., & Apostolides, P. F. (2024). Auditory corticofugal neurons transmit auditory and non-auditory information during behavior. Journal of Neuroscience, 44(7). https://www.jneurosci.org/content/44/7/e1190232023.abstract

Furutachi, S., Franklin, A. D., Aldea, A. M., Mrsic-Flogel, T. D., & Hofer, S. B. (2024). Cooperative thalamocortical circuit mechanism for sensory prediction errors. Nature, 1–9.

Glück, C., Zhou, Q., Droux, J., Chen, Z., Glandorf, L., Wegener, S., Razansky, D., Weber, B., & El Amki, M. (2024). Pia-FLOW: Deciphering hemodynamic maps of the pial vascular connectome and its response to arterial occlusion. Proceedings of the National Academy of Sciences, 121(28), e2402624121. https://doi.org/10.1073/pnas.2402624121

Gobbo, D., Rieder, P., Fang, L.-P., Buttigieg, E., Schablowski, M., Damo, E., Bosche, N., Dallorto, E., May, P., & Bai, X. (2024). Genetic ablation of GABAB receptors from oligodendrocyte precursor cells protects against demyelination in the mouse spinal cord. bioRxiv, 2024–05.

Hasegawa, M., Huang, Z., Paricio-Montesinos, R., & Gründemann, J. (2024). Network state changes in sensory thalamus represent learned outcomes. Nature Communications, 15(1), 7830.

Hsiang, J.-C., Shen, N., Soto, F., & Kerschensteiner, D. (2024). Distributed feature representations of natural stimuli across parallel retinal pathways. Nature Communications, 15(1), 1920.

Huang, R., Zeng, J., Yu, X., Shi, Y., Song, N., Zhang, J., Wang, P., Luo, M., Ma, Y., Xiao, C., Wang, L., Du, G., Cai, H., & Yang, W. (2024). Luteolin Alleviates Diabetic Nephropathy Fibrosis Involving AMPK/NLRP3/TGF-β Pathway. Diabetes, Metabolic Syndrome and Obesity, Volume 17, 2855–2867. https://doi.org/10.2147/DMSO.S450094

Intwala, B. B. (2024). CONTRIBUTION OF CHOLINERGIC DYSFUNCTION TO LEARNING DEFICITS IN FRAGILE X SYNDROME. https://escholarship.org/uc/item/5bp4x450

Iyer, V. (2024). “One of the Big Values of a PhD to an Industry Role Is the Proven Ability to Tackle a Substantial Project Largely Independently.” In C. R. Madan (Ed.), Academia and the World Beyond, Volume 2 (pp. 273–280). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-47980-9_30

Jevon, D., Cottle, L., Hallahan, N., Harwood, R., Samra, J. S., Gill, A. J., Loudovaris, T., Thomas, H. E., & Thorn, P. (2024). Capillary contact points determine beta cell polarity, control secretion and are disrupted in the db/db mouse model of diabetes. Diabetologia, 67(8), 1683–1697. https://doi.org/10.1007/s00125-024-06180-x

Kopyeva, I., Goldner, E. C., Hoye, J. W., Yang, S., Regier, M. C., Vera, K. R., Bretherton, R. C., & DeForest, C. A. (2024). Stepwise Stiffening/Softening of and Cell Recovery from Reversibly Formulated Hydrogel Double Networks. bioRxiv. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11030224/

Lees, R. M., Bianco, I. H., Campbell, R. A., Orlova, N., Peterka, D. S., Pichler, B., Smith, S. L., Yatsenko, D., Yu, C.-H., & Packer, A. M. (2024). Standardised Measurements for Monitoring and Comparing Multiphoton Microscope Systems. bioRxiv. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10849699/

Lees, R. M., Pichler, B., & Packer, A. M. (2024). Contribution of optical resolution to the spatial precision of two-photon optogenetic photostimulation in vivo. Neurophotonics, 11(1), 015006–015006.

Li, X., Du, Y., Huang, J.-F., Li, W.-W., Song, W., Fan, R.-N., Zhou, H., Jiang, T., Lu, C.-G., Guan, Z., Wang, X.-F., Gong, H., Li, X.-N., Li, A., Fu, L., & Sun, Y.-G. (2024). Link Brain-Wide Projectome to Neuronal Dynamics in the Mouse Brain. Neuroscience Bulletin. https://doi.org/10.1007/s12264-024-01232-z

Li, Z., Li, J., Zhao, Q., Zhao, X., & Sun, M. (2024). Two-Photon Image-Guided Automated 3D Locating of Micropipette Tip. 2024 43rd Chinese Control Conference (CCC), 4469–4474. https://ieeexplore.ieee.org/abstract/document/10662059/

Liao, Z., Gonzalez, K. C., Li, D. M., Yang, C. M., Holder, D., McClain, N. E., Zhang, G., Evans, S. W., Chavarha, M., & Simko, J. (2024). Functional architecture of intracellular oscillations in hippocampal dendrites. Nature Communications, 15(1), 6295.

Liu, C., Jin, C., Deng, J., Liang, J., Zhang, L., & Kong, L. (2024). Simultaneous dual-region two-photon imaging of biological dynamics spanning over 9 mm in vivo. Photonics Research, 12(3), 456–464.

Lopez-Ortega, E., Choi, J. Y., Hong, I., Roth, R. H., Cudmore, R. H., & Huganir, R. L. (2024). Stimulus-dependent synaptic plasticity underlies neuronal circuitry refinement in the mouse primary visual cortex. Cell Reports, 43(4). https://www.cell.com/cell-reports/fulltext/S2211-1247(24)00294-8

Madruga, B. A. (2024). Innovations in Optical Microscopy Methods for Studying Neural Circuit Function In-Vivo. University of California, Los Angeles. https://search.proquest.com/openview/bdfa7a7d7dca37412015e641d7c24a34/1?pq-origsite=gscholar&cbl=18750&diss=y

 

McGarry, S. D., Adjekukor, C., Ahuja, S., Greysson-Wong, J., Vien, I., Rinker, K. D., & Childs, S. J. (2024). Vessel Metrics: A software tool for automated analysis of vascular structure in confocal imaging. Microvascular Research, 151, 104610.

Metais, S., Suresh, S., Diniz, P., Vourdaki, C., Martin, I., Shivkumar, S., Bartels, R., Forget, N., & Rigneault, H. (2024). Hyperspectral acquisition with ScanImage at the single pixel level: Application to time domain coherent Raman imaging. Optics Express, 32(22), 38849–38863.

Mussells Pires, P., Zhang, L., Parache, V., Abbott, L. F., & Maimon, G. (2024). Converting an allocentric goal into an egocentric steering signal. Nature, 626(8000), 808–818.

Niraula, S., Yan, S. S., & Subramanian, J. (2024). Amyloid pathology impairs experience-dependent inhibitory synaptic plasticity. Journal of Neuroscience, 44(5). https://www.jneurosci.org/content/44/5/e0702232023.abstract

Ohtake, M., Abe, K., Hasegawa, M., Itokazu, T., Selvakumar, V., Matunis, A., Stacy, E., Froebrich, E., Huynh, N., & Lee, H. (2024). Encoding of self-initiated actions in axon terminals of the mesocortical pathway. Neurophotonics, 11(3), 033408–033408.

Ohman, L. C., Huang, T., Unwin, V. A., Singh, A., Walters, B., Whiddon, Z. D., & Krimm, R. F. (2024). Deciphering Peripheral Taste Neuron Diversity: Using Genetic Identity to Bridge Taste Bud Innervation Patterns and Functional Responses. Journal of Neuroscience.

Pegoraro, A. F., & Stolow, A. (2024). Chirp modulation stimulated raman scattering microscopy. Optics Express, 32(18), 31297–31310.

Pirhayati, D., Smith, C. L., Kroeger, R., Navlakha, S., Pfaffinger, P., Reimer, J., Arenkiel, B. R., Patel, A., & Moss, E. H. (2024). Dense and persistent odor representations in the olfactory bulb of awake mice. Journal of Neuroscience, 44(39). https://www.jneurosci.org/content/44/39/e0116242024.abstract

Sapkal, N., Mancini, N., Kumar, D. S., Spiller, N., Murakami, K., Vitelli, G., Bargeron, B., Maier, K., Eichler, K., & Jefferis, G. S. (2024). Neural circuit mechanisms underlying context-specific halting in Drosophila. Nature, 634(8032), 191–200.

Shih, A., Stamenkovic, S., Schmid, F., Weitermann, N., Takasaki, K., Bonney, S., Sosa, M., Li, Y., Benett, H., & Kim, Y. (2024). Impaired drainage through capillary-venous networks contributes to age-related white matter loss. https://www.researchsquare.com/article/rs-3949186/latest

Stern, M. A., Cole, E. R., Gross, R. E., & Berglund, K. (2024). Seizure event detection using intravital two-photon calcium imaging data. Neurophotonics, 11(2), 024202–024202.

Stringer, C., Zhong, L., Syeda, A., Du, F., Kesa, M., & Pachitariu, M. (2024). Rastermap: A discovery method for neural population recordings. Nature Neuroscience, 1–12.

Suresh, S., Martin, I., Métais, S., Shivkumar, S., Forget, N., Bartels, R., & Rigneault, H. (2024). Impulsive stimulated Raman scattering imaging using an ultra-fast acoustic-optics delay line. Advanced Chemical Microscopy for Life Science and Translational Medicine 2024, 12855, 31–36. https://www.spiedigitallibrary.org/conference-proceedings-of-spie/12855/1285507/Impulsive-stimulated-Raman-scattering-imaging-using-an-ultra-fast-acoustic/10.1117/12.2692912.short

Syeda, A., Zhong, L., Tung, R., Long, W., Pachitariu, M., & Stringer, C. (2024). Facemap: A framework for modeling neural activity based on orofacial tracking. Nature Neuroscience, 27(1), 187–195.

Szwaj, M., Davidson, I. A., Johnson, P. B., Jasion, G., Jung, Y., Sandoghchi, S. R., Herdzik, K. P., Bourdakos, K. N., Wheeler, N. V., & Mulvad, H. C. (2024). Double-Clad Antiresonant Hollow-Core Fiber and Its Comparison with Other Fibers for Multiphoton Micro-Endoscopy. Sensors, 24(8), 2482.

Tang, S., Cui, L., Pan, J., & Xu, N. (2024). Dynamic ensemble balance in direct-and indirect-pathway striatal projection neurons underlying decision-related action selection. Cell Reports, 43(9). https://www.cell.com/cell-reports/fulltext/S2211-1247(24)01077-5

Thomas, C. I., Ryan, M. A., McNabb, M. C., Kamasawa, N., & Scholl, B. (2024). Astrocyte coverage of excitatory synapses correlates to measures of synapse structure and function in ferret primary visual cortex. Glia, 72(10), 1785–1800. https://doi.org/10.1002/glia.24582

Vernuccio, F., Benachir, A., Fantuzzi, E. M., Morel, B., Bux, S., Martin, E., Villanueva, J., Pertot, Y., Thiré, N., & Heuke, S. (2024). Dual picosecond fast tunable optical parametric amplifier laser system for wide-field nonlinear optical microscopy. APL Photonics, 9(9). https://pubs.aip.org/aip/app/article/9/9/096113/3312693

Vickers, E. D., & McCormick, D. A. (2024). Pan-cortical 2-photon mesoscopic imaging and neurobehavioral alignment in awake, behaving mice. Elife, 13, RP94167.

Voigt, F. F., Reuss, A. M., Naert, T., Hildebrand, S., Schaettin, M., Hotz, A. L., Whitehead, L., Bahl, A., Neuhauss, S. C., & Roebroeck, A. (2024). Reflective multi-immersion microscope objectives inspired by the Schmidt telescope. Nature Biotechnology, 42(1), 65–71.

Wang, A., Ferguson, K. A., Gupta, J., Higley, M. J., & Cardin, J. A. (2024). Developmental trajectory of cortical somatostatin interneuron function. bioRxiv. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10942364/

Wu, X., Xu, W., Deng, L., Li, Y., Wang, Z., Sun, L., Gao, A., Wang, H., Yang, X., & Wu, C. (2024). Spatial multi-omics at subcellular resolution via high-throughput in situ pairwise sequencing. Nature Biomedical Engineering, 1–18.

Yu, C.-H., Yu, Y., Adsit, L. M., Chang, J. T., Barchini, J., Moberly, A. H., Benisty, H., Kim, J., Young, B. K., & Heng, K. (2024). The Cousa objective: A long-working distance air objective for multiphoton imaging in vivo. Nature Methods, 21(1), 132–141.

Yu, Y., Adsit, L. M., & Smith, I. T. (2024). Comprehensive software suite for functional analysis and synaptic input mapping of dendritic spines imaged in vivo. Neurophotonics, 11(2), 024307–024307.

Zheng, T. (2024). Advancing multiphoton imaging to explore tissue structure and dynamics in the bone [PhD Thesis, University of Georgia]. https://search.proquest.com/openview/38441012567d88f816befbd122d42abe/1?pq-origsite=gscholar&cbl=18750&diss=y

Zhou, Q., Glück, C., Tang, L., Glandorf, L., Droux, J., El Amki, M., Wegener, S., Weber, B., Razansky, D., & Chen, Z. (2024). Cortex-wide transcranial localization microscopy with fluorescently labeled red blood cells. Nature Communications, 15(1), 3526.

“Anatomical and Functional Characterization of the Larval Zebrafish Periaqueductal Gray Through the Development of Experimental Tools - ProQuest.” Accessed April 12, 2024. https://www.proquest.com/openview/231fde427f99eb45a2ef6fb0b0d8552e/1?pq-origsite=gscholar&cbl=18750&diss=y.

“Dynamics of Artificial Sensory Representations in Mouse Somatosensory Cortex - ProQuest.” Accessed April 12, 2024. https://www.proquest.com/openview/1fcd446ac9bbd00c9e89107894b44fb2/1?pq-origsite=gscholar&cbl=18750&diss=y.

“Electrophysiological and Behavioral Characterization of the Sodium Leak Channel NALCN in Dopaminergic Neurons - ProQuest.” Accessed April 12, 2024. https://www.proquest.com/openview/9f8e8b421b1d713dbb08b0ee6f7eda71/1?pq-origsite=gscholar&cbl=18750&diss=y.

“The Development of Dye-Doped Semiconducting Polymer Dots for Fluorescence Imaging and Sensing Applications - ProQuest.” Accessed April 12, 2024. https://www.proquest.com/openview/f594af706bea0240e81596a5517230ff/1?pq-origsite=gscholar&cbl=18750&diss=y.

Tsai, Yuan-Chen, Mohammad Hleihil, Kanako Otomo, Andrin Abegg, Anna Cavaccini, Patrizia Panzanelli, Teresa Cramer, et al. “The Gephyrin Scaffold Modulates Cortical Layer 2/3 Pyramidal Neuron Responsiveness to Single Whisker Stimulation.” Scientific Reports 14, no. 1 (February 20, 2024): 4169. https://doi.org/10.1038/s41598-024-54720-7.

Tworig, J., R. Morrie, K. Bistrong, R. D. Somaiya, S. Hsu, J. Liang, K. Cornejo, and M. B. Feller. “Differential Expression Analysis Identifies Candidate Synaptogenic Molecules for Wiring Direction-Selective Circuits in the Retina.” Journal of Neuroscience, March 20, 2024. https://doi.org/10.1523/JNEUROSCI.1461-23.2024.

Virga, Daniel M., Stevie Hamilton, Bertha Osei, Abigail Morgan, Parker Kneis, Emiliano Zamponi, Natalie J. Park, et al. “Activity-Dependent Compartmentalization of Dendritic Mitochondria Morphology through Local Regulation of Fusion-Fission Balance in Neurons in Vivo.” Nature Communications 15, no. 1 (March 8, 2024): 2142. https://doi.org/10.1038/s41467-024-46463-w.

Wang, Geng, Stephen A. Boppart, and Haohua Tu. “Compact Simultaneous Label-Free Autofluorescence Multi-Harmonic Microscopy for User-Friendly Photodamage-Monitored Imaging.” Journal of Biomedical Optics 29, no. 3 (March 2024): 036501. https://doi.org/10.1117/1.JBO.29.3.036501.

Wong, Hovy Ho-Wai, Alanna J. Watt, and P. Jesper Sjöström. “Synapse-Specific Burst Coding Sustained by Local Axonal Translation.” Neuron 112, no. 2 (January 2024): 264-276.e6. https://doi.org/10.1016/j.neuron.2023.10.011.

Zheng, Tianyi, Adrian R. Liversage, Kayvan F. Tehrani, Jarrod A. Call, Peter A. Kner, and Luke J. Mortensen. “Multi-Photon Fluorescence Microscopy with Adaptive Optics.” In Adaptive Optics and Wavefront Control for Biological Systems X, 12851:33–40. SPIE, 2024. https://doi.org/10.1117/12.3003445.

Zhong, Jincheng, Yingxian Zhang, Xinlin Chen, Shen Tong, Xiangquan Deng, Jie Huang, Zhenhui Li, et al. “In Vivo Deep Brain Multiphoton Fluorescence Imaging Emitting at NIR-I and NIR-II and Excited at NIR-IV.” Journal of Biophotonics 17, no. 4 (2024): e202300422. https://doi.org/10.1002/jbio.202300422.

Zhuo, Yizhou, Bin Luo, Xinyang Yi, Hui Dong, Xiaolei Miao, Jinxia Wan, John T. Williams, et al. “Improved Green and Red GRAB Sensors for Monitoring Dopaminergic Activity in Vivo.” Nature Methods 21, no. 4 (April 2024): 680–91. https://doi.org/10.1038/s41592-023-02100-w.

Znamenskiy, Petr, Mean-Hwan Kim, Dylan R. Muir, M. Florencia Iacaruso, Sonja B. Hofer, and Thomas D. Mrsic-Flogel. “Functional Specificity of Recurrent Inhibition in Visual Cortex.” Neuron 112, no. 6 (March 2024): 991-1000.e8. https://doi.org/10.1016/j.neuron.2023.12.013.

Looser, Zoe J., Zainab Faik, Luca Ravotto, Henri S. Zanker, Ramona B. Jung, Hauke B. Werner, Torben Ruhwedel, et al. “Oligodendrocyte–Axon Metabolic Coupling Is Mediated by Extracellular K+ and Maintains Axonal Health.” Nature Neuroscience 27, no. 3 (March 2024): 433–48. https://doi.org/10.1038/s41593-023-01558-3.

Lopez-Ortega, Elena, Jung Yoon Choi, Ingie Hong, Richard H. Roth, Robert H. Cudmore, and Richard L. Huganir. “Stimulus-Dependent Synaptic Plasticity Underlies Neuronal Circuitry Refinement in the Mouse Primary Visual Cortex.” Cell Reports 43, no. 4 (April 2024): 113966. https://doi.org/10.1016/j.celrep.2024.113966.

“Lopez-Ortega et al. - 2024 - Stimulus-Dependent Synaptic Plasticity Underlies n.Pdf.” Accessed April 12, 2024. https://www.cell.com/cell-reports/pdf/S2211-1247(24)00294-8.pdf.

Ma, Chenyan, Bing Li, Daniel Silverman, Xinlu Ding, Anan Li, Chi Xiao, Ganghua Huang, et al. “Microglia Regulate Sleep through Calcium-Dependent Modulation of Norepinephrine Transmission.” Nature Neuroscience 27, no. 2 (February 2024): 249–58. https://doi.org/10.1038/s41593-023-01548-5.

Ma, Pingchuan, Peter Chen, Elizabeth I. Tilden, Samarth Aggarwal, Anna Oldenborg, and Yao Chen. “Fast and Slow: Recording Neuromodulator Dynamics across Both Transient and Chronic Time Scales.” Science Advances 10, no. 8 (February 21, 2024): eadi0643. https://doi.org/10.1126/sciadv.adi0643.

Manikkoth, Mehreen, and Kim Dore. “Live FRET-FLIM Imaging to Study Metabotropic Signaling via the NMDA Receptor.” In New Technologies for Glutamate Interaction: Neurons and Glia, edited by Maria Kukley, 71–90. New York, NY: Springer US, 2024. https://doi.org/10.1007/978-1-0716-3742-5_4.

Manley, Jason, Sihao Lu, Kevin Barber, Jeffrey Demas, Hyewon Kim, David Meyer, Francisca Martínez Traub, and Alipasha Vaziri. “Simultaneous, Cortex-Wide Dynamics of up to 1 Million Neurons Reveal Unbounded Scaling of Dimensionality with Neuron Number.” Neuron 0, no. 0 (March 6, 2024). https://doi.org/10.1016/j.neuron.2024.02.011.

Narayanan, Sriram, Aalok Varma, and Vatsala Thirumalai. “Predictive Neural Computations in the Cerebellum Contribute to Motor Planning and Faster Behavioral Responses in Larval Zebrafish.” Science Advances 10, no. 1 (January 3, 2024): eadi6470. https://doi.org/10.1126/sciadv.adi6470.

Normoyle, Kieran P., Kyle P. Lillis, and Kevin J. Staley. “Synthesis and Characterization of a Novel Concentration-Independent Fluorescent Chloride Indicator, ABP-Dextran, Optimized for Extracellular Chloride Measurement.” Biomolecules 14, no. 1 (January 2024): 77. https://doi.org/10.3390/biom14010077.

Park, Soo Bin, and Gyorgy Lur. “Repeated Exposure to Multiple Concurrent Stressors Alters Visual Processing in the Adult Posterior Parietal Cortex.” SSRN Scholarly Paper. Rochester, NY, April 1, 2024. https://doi.org/10.2139/ssrn.4780447.

Pinke, Domonkos, John B. Issa, Gabriel A. Dara, Gergely Dobos, and Daniel A. Dombeck. “Full Field-of-View Virtual Reality Goggles for Mice.” Neuron 111, no. 24 (December 2023): 3941-3952.e6. https://doi.org/10.1016/j.neuron.2023.11.019.

Pirogova, Nadezhda. “Neural correlates of contrast normalization in the Drosophila visual system.” Text.PhDThesis, Ludwig-Maximilians-Universität München, 2023. https://edoc.ub.uni-muenchen.de/33005/.

Rieder, Phillip. “Glial Ca2+ Signaling in the Spinal Cord and the Myelin-Protective Effect of the GABAb Receptor in Oligodendrocyte Precursor Cells.” doctoralThesis, Saarländische Universitäts- und Landesbibliothek, 2023. https://doi.org/10.22028/D291-40958.

Rodwell, Vanessa, Manjiri Patil, Helen J. Kuht, Stephan C. F. Neuhauss, William H. J. Norton, and Mervyn G. Thomas. “Zebrafish Optokinetic Reflex: Minimal Reporting Guidelines and Recommendations.” Biology 13, no. 1 (January 2024): 4. https://doi.org/10.3390/biology13010004.

Shih, Andy, Stefan Stamenkovic, Franca Schmid, Nicolas Weitermann, Kevin Takasaki, Stephanie Bonney, Maria Sosa, et al. “Impaired Drainage through Capillary-Venous Networks Contributes to Age-Related White Matter Loss,” February 29, 2024. https://doi.org/10.21203/rs.3.rs-3949186/v1.

Suresh, Sisira, Ines Martin, Samuel Metais, Siddarth Shivkumar, Nicolas Forget, Randy Bartels, and Herve Rigneault. “Impulsive Stimulated Raman Scattering Imaging Using an Ultra-Fast Acoustic-Optics Delay Line.” In Advanced Chemical Microscopy for Life Science and Translational Medicine 2024, 12855:31–36. SPIE, 2024. https://doi.org/10.1117/12.2692912.

Tamimi, Amr, Martin Caldarola, Sebastian Hambura, Juan C. Boffi, Niels Noordzij, Johannes W. N. Los, Antonio Guardiani, et al. “Deep Mouse Brain Two-Photon near-Infrared Fluorescence Imaging Using a Superconducting Nanowire Single-Photon Detector Array.” arXiv, December 21, 2023. https://doi.org/10.48550/arXiv.2312.14042.

Thompson, E. J. “Subcortical Circuits for Procedural Learning and Memory.” Doctoral Thesis, UCL (University College London). Doctoral, UCL (University College London), 2024. https://discovery.ucl.ac.uk/id/eprint/10184170/.

Adamantidis, Antoine, Ida Luisa Boccalaro, Mattia Aime, Florence Aellen, Thomas Rusterholz, Micaela Borsa, Ivan Bozic, et al. “A Role for the Thalamus in Danger Discrimination during Sleep,” January 12, 2024. https://doi.org/10.21203/rs.3.rs-3395895/v1.

Binder, Nadine Felizitas, Mohamad El Amki, Chaim Glück, William Middleham, Anna Maria Reuss, Adrien Bertolo, Patrick Thurner, et al. “Leptomeningeal Collaterals Regulate Reperfusion in Ischemic Stroke and Rescue the Brain from Futile Recanalization.” Neuron, February 2024, S0896627324000576. https://doi.org/10.1016/j.neuron.2024.01.031.

Cody, Patrick, Manoj Kumar, and Thanos Tzounopoulos. “Cortical Zinc Signaling Is Necessary for Changes in Mouse Pupil Diameter That Are Evoked by Background Sounds with Different Contrasts.” Journal of Neuroscience 44, no. 11 (March 13, 2024). https://doi.org/10.1523/JNEUROSCI.0939-23.2024.

Dernic, Jan, Afroditi Eleftheriou, Melanie Rauch, Pascal Imseng, Henri Zanker, Zoe Looser, Rachel Meister, et al. “Abundance-Biased Codon Diversification Prevents Recombination  in AAV Production and Ensures Robust in Vivo Expression of Functional FRET Sensors,” February 15, 2024. https://doi.org/10.21203/rs.3.rs-3850580/v1.

Fernández, Alma, Anton Classen, Nityakalyani Josyula, James T. Florence, Alexei V. Sokolov, Marlan O. Scully, Paul Straight, and Aart J. Verhoef. “Simultaneous Two- and Three-Photon Deep Imaging of Autofluorescence in Bacterial Communities.” Sensors 24, no. 2 (January 2024): 667. https://doi.org/10.3390/s24020667.

Friedrichsen, Karl, Jen-Chun Hsiang, Chin-I. Lin, Liam McCoy, Katia Valkova, Daniel Kerschensteiner, and Josh L. Morgan. “Subcellular Pathways through VGluT3-Expressing Mouse Amacrine Cells Provide Locally Tuned Object-Motion-Selective Signals in the Retina.” Nature Communications 15, no. 1 (April 5, 2024): 2965. https://doi.org/10.1038/s41467-024-46996-0.

Gao, Yufeng, Feng Xiang, Jia Yu, Ting Wu, Jiuling Liao, Hui Li, Shiwei Ye, and Wei Zheng. “Accurate Piecewise Centroid Calculation Algorithm for Wavefront Measurement in Adaptive Optics.” Optics Express 32, no. 1 (January 1, 2024): 301–12. https://doi.org/10.1364/OE.510881.

Gellner, Anne-Kathrin, Janine Reis, Bernd L. Fiebich, and Brita Fritsch. “Cx3cr1 Deficiency Interferes with Learning- and Direct Current Stimulation-Mediated Neuroplasticity of the Motor Cortex.” European Journal of Neuroscience 59, no. 2 (2024): 177–91. https://doi.org/10.1111/ejn.16206.

Gruver, Kimberly. “Purkinje Cells Converge Non-Randomly on Neurons in the Cerebellar Nuclei,” 2023. https://escholarship.mcgill.ca/concern/theses/z316q680w?locale=en.

Guralnik, Ezra, Behnam Tayebi, Yi Yuan, Justin Little, Michal Balberg, and Shy Shoham. “Simultaneous Acousto-Optic Modulation and Multiphoton Fluorescence Imaging Provides Functional Imaging and New Image Details.” In Multiphoton Microscopy in the Biomedical Sciences XXIV, 12847:108–11. SPIE, 2024. https://doi.org/10.1117/12.3003387.

Hanafy, Amira Sayed, Alf Lamprecht, and Dirk Dietrich. “Local Perfusion of Capillaries Reveals Disrupted Beta-Amyloid Homeostasis at the Blood-Brain Barrier in Tg2576 Murine Alzheimer’s Model.” Fluids and Barriers of the CNS 20, no. 1 (November 22, 2023): 85. https://doi.org/10.1186/s12987-023-00492-7.

Haseeb, Fizza, Konstantinos N. Bourdakos, Ewan Forsyth, Kerry Setchfield, Alistair Gorman, Seshasailam Venkateswaran, Amanda J. Wright, Sumeet Mahajan, and Mark Bradley. “Development of Hydrogel-Based Standards and Phantoms for Non-Linear Imaging at Depth.” Journal of Biomedical Optics 28, no. 12 (December 2023): 126007. https://doi.org/10.1117/1.JBO.28.12.126007.

———. “Hydrogel-Based Standards for Single and Multiphoton Imaging at Depth.” In Design and Quality for Biomedical Technologies XVII, 12833:35–41. SPIE, 2024. https://doi.org/10.1117/12.2691508.

Hattori, Ryoma, Nathan G. Hedrick, Anant Jain, Shuqi Chen, Hanjia You, Mariko Hattori, Jun-Hyeok Choi, Byung Kook Lim, Ryohei Yasuda, and Takaki Komiyama. “Meta-Reinforcement Learning via Orbitofrontal Cortex.” Nature Neuroscience 26, no. 12 (December 2023): 2182–91. https://doi.org/10.1038/s41593-023-01485-3.

Hedrick, Nathan G., William J. Wright, and Takaki Komiyama. “Local and Global Predictors of Synapse Elimination during Motor Learning.” Science Advances 10, no. 11 (March 15, 2024): eadk0540. https://doi.org/10.1126/sciadv.adk0540.

Hruska-Plochan, Marian, Vera I. Wiersma, Katharina M. Betz, Izaskun Mallona, Silvia Ronchi, Zuzanna Maniecka, Eva-Maria Hock, et al. “A Model of Human Neural Networks Reveals NPTX2 Pathology in ALS and FTLD.” Nature 626, no. 8001 (February 2024): 1073–83. https://doi.org/10.1038/s41586-024-07042-7.

Hsiang, Jen-Chun, Ning Shen, Florentina Soto, and Daniel Kerschensteiner. “Distributed Feature Representations of Natural Stimuli across Parallel Retinal Pathways.” Nature Communications 15, no. 1 (March 1, 2024): 1920. https://doi.org/10.1038/s41467-024-46348-y.

Huang, Jie, Jincheng Zhong, Shen Tong, Yingxian Zhang, Ping Qiu, and Ke Wang. “In Vivo 3-Photon Fluorescence Microscopy of White Matter in Mouse Brain Excited at the 1700-Nm Window.” Journal of Innovative Optical Health Sciences, April 2024. https://doi.org/10.1142/S1793545824500068.

“Kappel - Social Recognition and Transcriptomic Cell Types i.Pdf.” Accessed April 12, 2024. https://edoc.ub.uni-muenchen.de/33243/2/Kappel_Johannes.pdf.

Kappel, Johannes. “Social Recognition and Transcriptomic Cell Types in the Developing Zebrafish Visual System,” n.d.

Lees, Robert M., Bruno Pichler, and Adam M. Packer. “Contribution of Optical Resolution to the Spatial Precision of Two-Photon Optogenetic Photostimulation in Vivo.” Neurophotonics 11, no. 1 (February 2024): 015006. https://doi.org/10.1117/1.NPh.11.1.015006.

Li, Bing, Chenyan Ma, Yun-An Huang, Xinlu Ding, Daniel Silverman, Changwan Chen, Dana Darmohray, et al. “Circuit Mechanism for Suppression of Frontal Cortical Ignition during NREM Sleep.” Cell 186, no. 26 (December 2023): 5739-5750.e17. https://doi.org/10.1016/j.cell.2023.11.012.

“Li et al. - 2023 - Circuit Mechanism for Suppression of Frontal Corti.Pdf.” Accessed April 12, 2024. https://www.cell.com/cell/pdf/S0092-8674(23)01229-1.pdf.

Li, Miao, and Guang Yang. “A Mesocortical Glutamatergic Pathway Modulates Neuropathic Pain Independent of Dopamine Co-Release.” Nature Communications 15, no. 1 (January 20, 2024): 643. https://doi.org/10.1038/s41467-024-45035-2.

Liu, Chi, Yuejun Hao, Bo Lei, Yi Zhong, and Lingjie Kong. “Removing Crosstalk Signals in Neuron Activity by Time Multiplexed Excitations in a Two-Photon All-Optical Physiology System.” Biomedical Optics Express 15, no. 4 (April 1, 2024): 2708–18. https://doi.org/10.1364/BOE.521047.

Liu, Chi, Cheng Jin, Junhao Deng, Junhao Liang, Licheng Zhang, and Lingjie Kong. “Simultaneous Dual-Region Two-Photon Imaging of Biological Dynamics Spanning over 9  Mm in Vivo.” Photonics Research 12, no. 3 (March 1, 2024): 456–64. https://doi.org/10.1364/PRJ.504895.

Liu, Jiashu, Yingtian He, Andreanne Lavoie, Guy Bouvier, and Bao-hua Liu. “A Direction-Selective Cortico-Brainstem Pathway Adaptively Modulates Innate Behaviors.” Nature Communications 14, no. 1 (December 20, 2023): 8467. https://doi.org/10.1038/s41467-023-42910-2.

Liversage, Adrian, Kayvan Forouhesh Tehrani, Tianyi Zheng, Peter Kner, and Luke Mortensen. “Binary Wavefront Manipulation Using an Epi-Detected SHG Guidestar.” In Adaptive Optics and Wavefront Control for Biological Systems X, 12851:41–48. SPIE, 2024. https://doi.org/10.1117/12.3003515.

Radulescu, C. I., N. Doostdar, et al. (2023). "Age-related dysregulation of homeostatic control in neuronal microcircuits." Nature Neuroscience. https://doi.org/10.1038/s41593-023-01451-z

Wu, M., X. Zhang, et al. "Dopamine pathways mediating affective state transitions after sleep loss." Neuron. https://doi.org/10.1016/j.neuron.2023.10.002

Chia, X. W., J. K. Tan, et al. (2023). "Emergence of cortical network motifs for short-term memory during learning." Nature Communications 14(1): 6869. https://doi.org/10.1038/s41467-023-42609-4

Jovanoski, K. D., L. Duquenoy, et al. (2023). "Dopaminergic systems create reward seeking despite adverse consequences." Nature. https://doi.org/10.1038/s41586-023-06671-8

Nasu, Y., A. Aggarwal, et al. (2023). "Lactate biosensors for spectrally and spatially multiplexed fluorescence imaging." Nature Communications 14(1): 6598. https://doi.org/10.1038/s41467-023-42230-5

Wang, A. Y. M., M. M. Kulkarni, et al. (2023). "An ON-type direction-selective ganglion cell in primate retina." Nature. https://doi.org/10.1038/s41586-023-06659-4

Uribe-Arias, A., R. Rozenblat, et al. "Radial astrocyte synchronization modulates the visual system during behavioral-state transitions." Neuron. https://doi.org/10.1016/j.neuron.2023.09.022

Wilton, D. K., K. Mastro, et al. (2023). "Microglia and complement mediate early corticostriatal synapse loss and cognitive dysfunction in Huntington’s disease." Nature Medicine. https://doi.org/10.1038/s41591-023-02566-3

Zhang, X., C. Wang, et al. (2023) "Analysis of Error Sources in the Lissajous Scanning Trajectory Based on Two-Dimensional MEMS Mirrors." Photonics 10 DOI: 10.3390/photonics10101123. https://doi.org/10.3390/photonics10101123

Ammer, G., E. Serbe-Kamp, et al. (2023). "Multilevel visual motion opponency in Drosophila." Nature Neuroscience. https://doi.org/10.1038/s41593-023-01443-z

Del Campo Fonseca, A., C. Glück, et al. (2023). "Ultrasound trapping and navigation of microrobots in the mouse brain vasculature." Nature Communications 14(1): 5889. https://doi.org/10.1038/s41467-023-41557-3

Chen, K., R. Gupta, et al. (2023). "Anesthesia-induced hippocampal-cortical hyperactivity and tau hyperphosphorylation impair remote memory retrieval in Alzheimer's disease." Alzheimer's & Dementia n/a(n/a). https://doi.org/10.1002/alz.13464

Ikezoe, K., N. Hidaka, et al. (2023). "Cerebellar climbing fibers multiplex movement and reward signals during a voluntary movement task in mice." Communications Biology 6(1): 924. https://doi.org/10.1038/s42003-023-05309-9

Kong, C., C. Pilger, et al. (2023). "Hyperspectral Coherent Raman Scattering (CRS) Microscopy Based on a Rapidly Tunable and Environmentally Stable Fiber Laser." Laser & Photonics Reviews n/a(n/a): 2300521. https://doi.org/10.1002/lpor.202300521

Dana, E. C.-L., S. Lorenzo, et al. (2023). "Contributions of the Sodium Leak Channel NALCN to Pacemaking of Medial Ventral Tegmental Area and Substantia Nigra Dopaminergic Neurons." The Journal of Neuroscience: JN-RM-0930-0922. https://doi.org/10.1523/JNEUROSCI.0930-22.2023

Li, C., N. K. Kühn, et al. (2023). "Pathway-specific inputs to the superior colliculus support flexible responses to visual threat." Science Advances 9(35): eade3874. https://www.science.org/doi/10.1126/sciadv.ade3874

Willmore, L., A. R. Minerva, et al. "Overlapping representations of food and social stimuli in mouse VTA dopamine neurons." Neuron. https://doi.org/10.1016/j.neuron.2023.08.003

Lendner, J. D., N. Niethard, et al. (2023). "Human REM sleep recalibrates neural activity in support of memory formation." Sci Adv 9(34): 25. https://pubmed.ncbi.nlm.nih.gov/37624898/

Grochowska, K. M., M. Sperveslage, et al. (2023). "Chaperone-mediated autophagy in neuronal dendrites utilizes activity-dependent lysosomal exocytosis for protein disposal." Cell Reports 42(8). https://doi.org/10.1016/j.celrep.2023.112998

Priest, M. F., S. N. Freda, et al. (2023). "Peptidergic and functional delineation of the Edinger-Westphal nucleus." Cell Reports 42(8). https://doi.org/10.1016/j.biomaterials.2023.122277

Weber, T. D., M. V. Moya, et al. (2023). "High-speed multiplane confocal microscopy for voltage imaging in densely labeled neuronal populations." Nature Neuroscience. https://doi.org/10.1038/s41593-023-01408-2

Bender, P. T. R., M. McCollum, et al. (2023). "Synaptic zinc potentiates AMPA receptor function in mouse auditory cortex." Cell Reports 42(8

): 112932. https://doi.org/10.1016/j.celrep.2023.112932

Mamiya, A., A. Sustar, et al. "Biomechanical origins of proprioceptor feature selectivity and topographic maps in the <em>Drosophila</em> leg." Neuron. https://doi.org/10.1016/j.neuron.2023.07.009

Xu, D., K. N. Bourdakos, et al. (2023). "All-fiberized 1840-nm femtosecond thulium fiber laser for label-free nonlinear microscopy." Biomedical Optics Express 14(9): 4520-4530. https://doi.org/10.1364/BOE.495879

Bounds, H. A., M. Sadahiro, et al. (2023). "All-optical recreation of naturalistic neural activity with a multifunctional transgenic reporter mouse." Cell Reports 42(8). https://doi.org/10.1016/j.celrep.2023.112909

Tu, X., A. Jain, et al. (2023). "Local autocrine plasticity signaling in single dendritic spines by insulin-like growth factors." Science Advances 9(31): eadg0666. https://www.science.org/doi/full/10.1126/sciadv.adg0666

Ramamurthy, D. L., A. Chen, et al. "VIP interneurons in sensory cortex encode sensory and action signals but not direct reward signals." Current Biology. https://doi.org/10.1016/j.cub.2023.06.086

Green, J., C. A. Bruno, et al. (2023). "A cell-type-specific error-correction signal in the posterior parietal cortex." Nature. https://doi.org/10.1038/s41586-023-06357-1

Sam, P., M. William, et al. (2023). "Multimodal Temporal Pattern Discrimination Is Encoded in Visual Cortical Dynamics." eneuro 10(7): ENEURO.0047-0023.2023. https://doi.org/10.1523/ENEURO.0047-23.2023

Allen, C. H., R. Skillings, et al. (2023). "Investigating ionizing radiation-induced changes in breast cancer cells using stimulated Raman scattering microscopy." J Biomed Opt 28(7): 11. https://pubmed.ncbi.nlm.nih.gov/37441447/

Kumar, M., G. Handy, et al. (2023). "Cell-type-specific plasticity of inhibitory interneurons in the rehabilitation of auditory cortex after peripheral damage." Nature Communications 14(1): 4170. https://doi.org/10.1038/s41467-023-39732-7

Pancholi, R., L. Ryan, et al. (2023). "Learning in a sensory cortical microstimulation task is associated with elevated representational stability." Nature Communications 14(1): 3860. https://doi.org/10.1038/s41467-023-39542-x

Shinotsuka, T., T. Miyazawa, et al. (2023). "Stimulated Raman scattering microscopy reveals a unique and steady nature of brain water dynamics." Cell Reports Methods: 100519. https://doi.org/10.1016/j.crmeth.2023.100519

Tsujioka, S., A. Sumino, et al. (2023). "Imaging single CaMKII holoenzymes at work by high-speed atomic force microscopy." Science Advances 9(26): eadh1069. DOI: 10.1126/sciadv.adh1069

Deán-Ben, X. L., J. Robin, et al. (2023). "Deep optoacoustic localization microangiography of ischemic stroke in mice." Nature Communications 14(1): 3584. https://doi.org/10.1038/s41467-023-39069-1

Ali, O., P. Soo Bin, et al. (2023). "A comprehensive, affordable, open-source hardware-software solution for flexible implementation of complex behaviors in head-fixed mice." eneuro: ENEURO.0018-0023.2023. https://doi.org/10.1523/ENEURO.0018-23.2023

Zhao, B., M. Koyama, et al. (2023). "High-resolution multi-z confocal microscopy with a diffractive optical element." Biomedical Optics Express 14(6): 3057-3071. https://doi.org/10.1364/BOE.491538

Albarran, E., Y. Sun, et al. (2023). "Postsynaptic synucleins mediate endocannabinoid signaling." Nature Neuroscience. https://doi.org/10.1038/s41593-023-01345-0

Langley, R. C., A. J. Canty, et al. (2023). "Repeated Measurement of Microglia-Dendritic Spine Interactions Using Multi-Photon Imaging." Curr Protoc 3(5): 791. DOI: 10.1002/cpz1.791

Ntamati, N. R., M. A. Acuña, et al. (2023). "Pain-induced adaptations in the claustro-cingulate pathway." Cell Reports 42(5): 112506. https://doi.org/10.1016/j.celrep.2023.112506

Shakir, S., Y. B. Li, et al. (2023). "Visualization of Fibrillar Collagen Networks Using Label-Free Nonlinear Optical Microscopy: Deciphering the ECM Structure of 3D-Bioprinted Constructs." CMBES Proceedings 45. https://proceedings.cmbes.ca/index.php/proceedings/article/view/1048

Gagnon, J. R., C. H. Allen, et al. (2023). "Spectral focusing-based stimulated Raman scattering microscopy using compact glass blocks for adjustable dispersion." Biomedical Optics Express 14(6): 2510-2522. https://doi.org/10.1364/BOE.486753

Kong, E., K.-H. Lee, et al. (2023). "Dynamic and stable hippocampal representations of social identity and reward expectation support associative social memory in male mice." Nature Communications 14(1): 2597. https://doi.org/10.1038/s41467-023-38338-3

Hanafy, N. A. N. (2023). "Extracellular alkaline pH enhances migratory behaviors of hepatocellular carcinoma cells as a caution against the indiscriminate application of alkalinizing drug therapy: In vitro microscopic studies." Acta Histochemica 125(4): 152032. https://doi.org/10.1016/j.acthis.2023.152032

Okray, Z., P. F. Jacob, et al. (2023). "Multisensory learning binds neurons into a cross-modal memory engram." Nature. https://doi.org/10.1038/s41586-023-06013-8

Zhong, W., R. Oda, et al. (2023). "Protocol to image deuterated propofol in living rat neurons using multimodal stimulated Raman scattering microscopy." STAR Protocols 4(2): 102221. https://doi.org/10.1016/j.xpro.2023.102221

Biswas, S., M. R. Emond, et al. (2021). "δ-Protocadherins regulate neural progenitor cell division by antagonizing Ryk and Wnt/β-catenin signaling." iScience 24(8): 20. DOI: 10.1016/j.isci.2021.102932

Moll, F. W., D. Kranz, et al. (2023). "Thalamus drives vocal onsets in the zebra finch courtship song." Nature 616(7955): 132-136. https://doi.org/10.1038/s41586-023-05818-x

Ding, Z., P. G. Fahey, et al. (2023). "Functional connectomics reveals general wiring rule in mouse visual cortex." bioRxiv: 2023.2003.2013.531369. https://doi.org/10.1101/2023.03.13.531369

Ferguson, K. A., J. Salameh, et al. (2023). "VIP interneurons regulate cortical size tuning and visual perception." bioRxiv: 2023.2003.2014.532664. https://doi.org/10.1101/2023.03.14.532664

Suresh, A. and A. Dunaevsky (2023). "Impaired AMPARs translocation into dendritic spines with motor skill learning in the Fragile X mouse model." eneuro: ENEURO.0364-0322.2023. https://doi.org/10.1523/ENEURO.0364-22.2023

Leighton, A. H., J. E. Cheyne, et al. (2023). "Clustered synapses develop in distinct dendritic domains in visual cortex before eye opening." bioRxiv: 2023.2003.2002.530772. https://doi.org/10.1101/2023.03.02.530772

Abdeladim, L., H. Shin, et al. (2023). "Probing inter-areal computations with a cellular resolution two-photon holographic mesoscope." bioRxiv: 2023.2003.2002.530875. https://doi.org/10.1101/2023.03.02.530875

LaFosse, P. K., Z. Zhou, et al. (2023). "Bicistronic expression of a high-performance calcium indicator and opsin for all-optical stimulation and imaging at cellular resolution." eneuro: ENEURO.0378-0322.2023. https://doi.org/10.1523/ENEURO.0378-22.2023

Binder, N. F., M. E. Amki, et al. (2023). "Leptomeningeal collaterals regulate reperfusion in ischemic stroke." bioRxiv: 2023.2002.2025.529915. https://doi.org/10.1101/2023.02.25.529915

Bojarskaite, L., A. Vallet, et al. (2023). "Sleep cycle-dependent vascular dynamics in male mice and the predicted effects on perivascular cerebrospinal fluid flow and solute transport." Nature Communications 14(1): 953. https://doi.org/10.1038/s41467-023-36643-5

Niraula, S., W. L. Hauser, et al. (2023). "Repeated passive visual experience modulates spontaneous and novelty-evoked neural activity." bioRxiv: 2023.2002.2021.529278. https://doi.org/10.1101/2023.02.21.529278

Yang, Y., H. Shen, et al. (2023). "Learning-induced reorganization of neuronal subnetworks in the primary sensory cortex." bioRxiv: 2023.2002.2021.529414. https://doi.org/10.1101/2023.02.21.529414

Carrillo-Reid, L., W. Yang, et al. (2023). Optical and Analytical Methods to Visualize and Manipulate Cortical Ensembles and Behavior. All-Optical Methods to Study Neuronal Function. E. Papagiakoumou. New York, NY, Springer US: 331-361. https://doi.org/10.1007/978-1-0716-2764-8_11

Clary, R. C., B. A. Jenkins, et al. (2023). "Spatiotemporal dynamics of sensory neuron and Merkel-cell remodeling are decoupled during epidermal homeostasis." bioRxiv: 2023.2002.2014.528558. https://doi.org/10.1101/2023.02.14.528558

Costine-Bartell, B. A., L. Martinez-Ramirez, et al. (2023). "2-Photon imaging of fluorescent proteins in living swine." bioRxiv: 2023.2002.2014.528533. https://doi.org/10.1101/2023.02.14.528533

Garrett, M., P. Groblewski, et al. (2023). "Stimulus novelty uncovers coding diversity in visual cortical circuits." bioRxiv: 2023.2002.2014.528085. https://doi.org/10.1101/2023.02.14.528085

Gill, J. V., G. M. Lerman, et al. (2023). Illuminating Neural Computation Using Precision Optogenetics-Controlled Synthetic Perception. All-Optical Methods to Study Neuronal Function. E. Papagiakoumou. New York, NY, Springer US: 363-392. https://doi.org/10.1007/978-1-0716-2764-8_12

Murphy, S. C., L. Godenzini, et al. (2023). "Cocaine regulates sensory filtering in cortical pyramidal neurons." Cell Reports 42(2). https://doi.org/10.1016/j.celrep.2023.112122

Wang, X., P. A. Roberts, et al. (2023). "Amacrine cells differentially balance zebrafish color circuits in the central and peripheral retina." Cell Reports 42(2). https://doi.org/10.1016/j.celrep.2023.112055

Funamizu, A., F. Marbach, et al. (2023). "Stable sound decoding despite modulated sound representation in the auditory cortex." bioRxiv: 2023.2001.2031.526457. https://doi.org/10.1101/2023.01.31.526457

McClain, S. P., X. Ma, et al. (2023). "&lt;em&gt;In vivo&lt;/em&gt; photopharmacology with light-activated opioid drugs." bioRxiv: 2023.2002.2002.526901. https://doi.org/10.1101/2023.02.02.526901

Thome, C., J. M. Janssen, et al. (2023). "Live imaging of excitable axonal microdomains in ankyrin-G-GFP mice." bioRxiv: 2023.2002.2001.525891. https://doi.org/10.1101/2023.02.01.525891

Vaidya, S. P., R. A. Chitwood, et al. (2023). "The formation of an expanding memory representation in the hippocampus." bioRxiv: 2023.2002.2001.526663. https://doi.org/10.1101/2023.02.01.526663

Ferrer Ortas, J., P. Mahou, et al. (2023). "Label-free imaging of red blood cells and oxygenation with color third-order sum-frequency generation microscopy." Light: Science & Applications 12(1): 29. https://doi.org/10.1038/s41377-022-01064-4

Hanafy, A. S., P. Steinlein, et al. (2023). "Subcellular analysis of blood-brain barrier function by micro-impalement of vessels in acute brain slices." Nature Communications 14(1): 481. https://doi.org/10.1038/s41467-023-36070-6

Kline, A. M., D. A. Aponte, et al. (2023). "Distinct nonlinear spectrotemporal integration in primary and secondary auditory cortices." bioRxiv: 2023.2001.2025.525588. https://doi.org/10.1101/2023.01.25.525588

Komorowska-Müller, J. A., A.-K. Gellner, et al. (2023). "Chronic low-dose Δ9-tetrahydrocannabinol (THC) treatment stabilizes dendritic spines in 18-month-old mice." Scientific Reports 13(1): 1390. https://doi.org/10.1038/s41598-022-27146-2

Yao, P., R. Liu, et al. (2023). "Guide to the construction and use of an adaptive optics two-photon microscope with direct wavefront sensing." bioRxiv: 2023.2001.2024.525307. https://doi.org/10.1101/2023.01.24.525307

Chen, X., D. A. Wolfe, et al. (2023). "Functional gene delivery to and across brain vasculature of systemic AAVs with endothelial-specific tropism in rodents and broad tropism in primates." bioRxiv: 2023.2001.2012.523844. https://doi.org/10.1101/2023.01.12.523844

Konstantinos, N. B., X. Lin, et al. (2023). Deep tissue imaging with multiphoton microscopy in the short-wavelength infrared windows. Proc.SPIE. https://doi.org/10.1117/12.2647553

Mano, O., M. Choi, et al. (2023). "Long timescale anti-directional rotation in &lt;em&gt;Drosophila&lt;/em&gt; optomotor behavior." bioRxiv: 2023.2001.2006.523055. https://doi.org/10.1101/2023.01.06.523055

Tanaka, R., B. Zhou, et al. (2023). "&lt;em&gt;Drosophila&lt;/em&gt; integrates visual evidence and counterevidence in self motion estimation." bioRxiv: 2023.2001.2004.522814. https://doi.org/10.1101/2023.01.04.522814

Wu, X., W. Xu, et al. (2023). "Development of Multiomics &lt;em&gt;in situ&lt;/em&gt; Pairwise Sequencing (MiP-Seq) for Single-cell Resolution Multidimensional Spatial Omics." bioRxiv: 2023.2001.2007.523058. https://doi.org/10.1101/2023.01.07.523058

Campbell, E. P., A. A. Abushawish, et al. (2023). "Electrical signals in the ER are cell type and stimulus specific with extreme spatial compartmentalization in neurons." Cell Reports 42(1). https://doi.org/10.1016/j.celrep.2022.111943

Johnson, E., M. Clark, et al. (2022). "Graded spikes differentially signal neurotransmitter input in cerebrospinal fluid contacting neurons of the mouse spinal cord." iScience: 105914. https://doi.org/10.1016/j.isci.2022.105914

Makino, H. (2022). "Arithmetic value representation for hierarchical behavior composition." Nature Neuroscience. https://doi.org/10.1038/s41593-022-01211-5

Stobart, J. L., E. Erlebach, et al. (2022). "Altered hemodynamics and vascular reactivity in a mouse model with severe pericyte deficiency." Journal of Cerebral Blood Flow & Metabolism: 0271678X221147366. https://doi.org/10.1177/0271678X221147366

Zhou, Q., Z. Chen, et al. (2022). "Three-dimensional wide-field fluorescence microscopy for transcranial mapping of cortical microcirculation." Nature Communications 13(1): 7969. https://doi.org/10.1038/s41467-022-35733-0

Xia, M.-C., J. Guo, et al. (2022). "Dexmedetomidine Preserves Activity of Neurons in Primary Somatosensory Cortex Compared to Propofol and Ketamine." Brain Sciences 12(12): 1720. https://doi.org/10.3390/brainsci12121720

Kubitschke, M., M. Müller, et al. (2022). "Next generation genetically encoded fluorescent sensors for serotonin." Nature Communications 13(1): 7525. https://doi.org/10.1038/s41467-022-35200-w

Fisher, Y. E., M. Marquis, et al. (2022). "Dopamine promotes head direction plasticity during orienting movements." Nature 612(7939): 316-322. https://doi.org/10.1038/s41586-022-05485-4

Kole, J., H. Ahmed, et al. (2022). Live-Cell Imaging: A Balancing Act Between Speed, Sensitivity, and Resolution. Principles of Light Microscopy: From Basic to Advanced. V. Nechyporuk-Zloy. Cham, Springer International Publishing: 139-172. https://doi.org/10.1007/978-3-031-04477-9_6

Marquis, M. and R. I. Wilson (2022). "Locomotor and olfactory responses in dopamine neurons of the Drosophila superior-lateral brain." Current Biology. https://doi.org/10.1016/j.cub.2022.11.008

Eleftheriou, A., L. Ravotto, et al. (2022). "Simultaneous dynamic glucose-enhanced (DGE) MRI and fiber photometry measurements of glucose in the healthy mouse brain." NeuroImage: 119762. https://doi.org/10.1016/j.neuroimage.2022.119762

Lin, J., Z. Cheng, et al. (2022). "Optical gearbox enabled versatile multiscale high-throughput multiphoton functional imaging." Nature Communications 13(1): 6564. https://doi.org/10.1038/s41467-022-34472-6

Wang, H. C., A. M. LeMessurier, et al. (2022). "Tuning instability of non-columnar neurons in the salt-and-pepper whisker map in somatosensory cortex." Nature Communications 13(1): 6611. https://doi.org/10.1038/s41467-022-34261-1

Massengill, C. I., L. Bayless-Edwards, et al. (2022). "Sensitive genetically encoded sensors for population and subcellular imaging of cAMP in vivo." Nature Methods. https://doi.org/10.1038/s41592-022-01646-5

Svara, F., D. Förster, et al. (2022). "Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain." Nature Methods. https://doi.org/10.1038/s41592-022-01621-0

Uguz, I. and K. L. Shepard (2022). "Spatially controlled, bipolar, cortical stimulation with high-capacitance, mechanically flexible subdural surface microelectrode arrays." Sci Adv 8(42): 19. DOI: 10.1126/sciadv.abq6354

Matteucci, G., M. Guyoton, et al. (2022). "Cortical sensory processing across motivational states during goal-directed behavior." Neuron. https://doi.org/10.1016/j.neuron.2022.09.032

Li, X., Y. Li, et al. (2022). "Real-time denoising enables high-sensitivity fluorescence time-lapse imaging beyond the shot-noise limit." Nature Biotechnology. https://doi.org/10.1038/s41587-022-01450-8

Franke, K., K. F. Willeke, et al. (2022). "State-dependent pupil dilation rapidly shifts visual feature selectivity." Nature 610(7930): 128-134. https://doi.org/10.1038/s41586-022-05270-3

Polesel, M., M. Kaminska, et al. (2022). "Spatiotemporal organisation of protein processing in the kidney." Nature Communications 13(1): 5732. https://doi.org/10.1038/s41467-022-33469-5

Hagai, H.-G., G. Lior, et al. (2022). "Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications." Neurophotonics 9(3): 031920. https://doi.org/10.1117/1.NPh.9.3.031920

Kanamori, T. and T. D. Mrsic-Flogel (2022). "Independent response modulation of visual cortical neurons by attentional and behavioral states." Neuron. https://doi.org/10.1016/j.neuron.2022.08.028

Rabinovich, R. J., D. D. Kato, et al. (2022). "Learning enhances encoding of time and temporal surprise in mouse primary sensory cortex." Nature Communications 13(1): 5504. https://doi.org/10.1038/s41467-022-33141-y

Li, M., H. Zhou, et al. (2022). "Activation of VIP interneurons in the prefrontal cortex ameliorates neuropathic pain aversiveness." Cell Reports 40(11): 111333. https://doi.org/10.1016/j.celrep.2022.111333

Au - Yuan, Y. and F. Au - Lu (2022). "A Flexible Chamber for Time-Lapse Live-Cell Imaging with Stimulated Raman Scattering Microscopy." JoVE(186): e64449. doi:10.3791/64449 (2022).

DePiero, V. J. and B. G. Borghuis (2022). "Phase advancing is a common property of multiple neuron classes in the mouse retina." eneuro: ENEURO.0270-0222.2022. https://doi.org/10.1523/ENEURO.0270-22.2022

Pettit, N. L., E.-L. Yap, et al. (2022). "Fos ensembles encode and shape stable spatial maps in the hippocampus." Nature. https://doi.org/10.1038/s41586-022-05113-1

Spampinato, G. L. B., E. Ronzitti, et al. (2022). "All-optical inter-layers functional connectivity investigation in the mouse retina." Cell Reports Methods 2(8): 100268. https://doi.org/10.1016/j.crmeth.2022.100268

Liu, Z., X. Lu, et al. (2022). "Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy." Cell. https://doi.org/10.1016/j.cell.2022.07.013

Moroni, M., M. Brondi, et al. (2022). "SmaRT2P: a software for generating and processing smart line recording trajectories for population two-photon calcium imaging." Brain Informatics 9(1): 18. https://doi.org/10.1186/s40708-022-00166-4

Yates, J. L. and B. Scholl Unraveling Functional Diversity of Cortical Synaptic Architecture Through the Lens of Population Coding, Front Synaptic Neurosci. 2022 Jul 26;14:888214. doi: 10.3389/fnsyn.2022.888214. eCollection 2022.

Aggarwal, A., R. Liu, et al. (2022). "Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission." bioRxiv: 2022.2002.2013.480251. https://doi.org/10.1101/2022.02.13.480251

Voitov, I. and T. D. Mrsic-Flogel (2022). "Cortical feedback loops bind distributed representations of working memory." Nature. https://doi.org/10.1038/s41586-022-05014-3

Flores-Valle, A. and J. D. Seelig (2022). "Axial motion estimation and correction for simultaneous multi-plane two-photon calcium imaging." Biomed Opt Express 13(4): 2035-2049. DOI: 10.1364/BOE.445775

Rodriguez-Rozada, S., J. Wietek, et al. (2022). "Aion is a bistable anion-conducting channelrhodopsin that provides temporally extended and reversible neuronal silencing." Communications Biology 5(1): 687. https://doi.org/10.1038/s42003-022-03636-x

Amo, R., S. Matias, et al. (2022). "A gradual temporal shift of dopamine responses mirrors the progression of temporal difference error in machine learning." Nature Neuroscience. https://doi.org/10.1038/s41593-022-01109-2

Fieblinger, T., A. Perez-Alvarez, et al. (2022). "Presynaptic cGMP sets synaptic strength in the striatum and is important for motor learning." EMBO reports n/a(n/a): e54361. https://doi.org/10.15252/embr.202154361

Tseng, S.-Y., S. N. Chettih, et al. (2022). "Shared and specialized coding across posterior cortical areas for dynamic navigation decisions." Neuron. https://doi.org/10.1016/j.neuron.2022.05.012

Broom, E., V. Imbriotis, et al. (2022). "Recruitment of frontal sensory circuits during visual discrimination." Cell Reports 39(10): 110932. https://doi.org/10.1016/j.celrep.2022.110932

Cody, P. A. and T. Tzounopoulos (2022). "Neuromodulatory mechanisms underlying contrast gain control in mouse auditory cortex." The Journal of Neuroscience: JN-RM-2054-2021. https://doi.org/10.1523/JNEUROSCI.2054-21.2022

Hedrick, N. G., Z. Lu, et al. (2022). "Learning binds new inputs into functional synaptic clusters via spinogenesis." Nature Neuroscience 25(6): 726-737. https://doi.org/10.1038/s41593-022-01086-6

Suhaimi, A., W. H. Lim Amos, et al. "Representation learning in the artificial and biological neural networks underlying sensorimotor integration." Science Advances 8(22): eabn0984. DOI: 10.1126/sciadv.abn0984

Kannan, M., S. Singh, et al. (2022). "HIV-1 Tat induced microglial EVs leads to neuronal synaptodendritic injury: microglia-neuron cross-talk in NeuroHIV." Extracellular Vesicles and Circulating Nucleic Acids 3(2): 133-149. http://dx.doi.org/10.20517/evcna.2022.14

Holmes, M. E., S. Kiderlen, et al. (2022). "Next-Generation Laser Scanning Multiphoton Microscopes are Turnkey, Portable, and Industry-Ready." Microscopy Today 30(3): 16-23. doi:10.1017/S1551929522000657

Fei, X., G. Monique, et al. (2022). Deep confocal fluorescence microscopy with single-photon superconducting nanowire detector. Proc.SPIE. https://doi.org/10.1117/12.2620775

Li, J., Z. Zhang, et al. (2022). "A potent luminogen with NIR-IIb excitable AIE features for ultradeep brain vascular and hemodynamic three-photon imaging." Biomaterials 287: 121612. https://doi.org/10.1016/j.biomaterials.2022.121612

Koveal, D., P. C. Rosen, et al. (2022). "A high-throughput multiparameter screen for accelerated development and optimization of soluble genetically encoded fluorescent biosensors." Nature Communications 13(1): 2919. https://doi.org/10.1038/s41467-022-30685-x

Osorno, T., S. Rudolph, et al. (2022). "Candelabrum cells are ubiquitous cerebellar cortex interneurons with specialized circuit properties." Nature Neuroscience. https://doi.org/10.1038/s41593-022-01057-x 

Sun, L., C.-K. Tong, et al. (2022). "Targeted ubiquitination of sensory neuron calcium channels reduces the development of neuropathic pain." Proceedings of the National Academy of Sciences 119(20): e2118129119. https://doi.org/10.1073/pnas.2118129119

Moya-Díaz, J., B. James, et al. (2022). "Diurnal changes in the efficiency of information transmission at a sensory synapse." Nature Communications 13(1): 2613. https://doi.org/10.1038/s41467-022-30202-0

Chen, X., Y. Du, et al. (2022). "Transcriptomic mapping uncovers Purkinje neuron plasticity driving learning." Nature. https://doi.org/10.1038/s41586-022-04711-3

Erlebach, E., L. Ravotto, et al. (2022). "Measurement of cerebral oxygen pressure in living mice by two-photon phosphorescence lifetime microscopy." STAR Protocols 3(2): 101370. https://doi.org/10.1016/j.xpro.2022.101370

Pettit, N. L., X. C. Yuan, et al. (2022). "Hippocampal place codes are gated by behavioral engagement." Nature Neuroscience. https://doi.org/10.1038/s41593-022-01050-4

Hattori, R. and T. Komiyama (2022). "Longitudinal two-photon calcium imaging with ultra-large cranial window for head-fixed mice." STAR Protocols 3(2): 101343. https://doi.org/10.1016/j.xpro.2022.101343

Georgiou, C., V. Kehayas, et al. (2022). "A subpopulation of cortical VIP-expressing interneurons with highly dynamic spines." Communications Biology 5(1): 352. https://doi.org/10.1038/s42003-022-03278-z

Summers, M. T. and M. B. Feller (2022). "Distinct inhibitory pathways control velocity and directional tuning in the mouse retina." Current Biology. https://doi.org/10.1016/j.cub.2022.03.054

Suzuki, N., M. L. S. Tantirigama, et al. (2022). "Fast and slow feedforward inhibitory circuits for cortical odor processing." eLife 11: e73406. DOI: 10.7554/eLife.73406

Hösli, L., M. Zuend, et al. (2022). "Direct vascular contact is a hallmark of cerebral astrocytes." Cell Reports 39(1): 110599. https://doi.org/10.1016/j.celrep.2022.110599

Fearey, B. C., L. Binkle, et al. (2022). "A glibenclamide-sensitive TRPM4-mediated component of CA1 excitatory postsynaptic potentials appears in experimental autoimmune encephalomyelitis." Scientific Reports 12(1): 6000. https://doi.org/10.1038/s41598-022-09875-6

Ammer, G., R. M. Vieira, et al. (2022). "Anatomical distribution and functional roles of electrical synapses in Drosophila." Current Biology. https://doi.org/10.1016/j.cub.2022.03.040

Formozov, A., M. Chini, et al. (2022). "Calcium Imaging and Electrophysiology of hippocampal Activity under Anesthesia and natural Sleep in Mice." Scientific Data 9(1): 113. https://doi.org/10.1038/s41597-022-01244-2

Horgan, C. C., M. Jensen, et al. (2022). "Hybrid confocal Raman endomicroscopy for morpho-chemical tissue characterization." Biomedical Optics Express 13(4): 2278-2285. https://doi.org/10.1364/BOE.449110

Zong, W., H. A. Obenhaus, et al. "Large-scale two-photon calcium imaging in freely moving mice." Cell. https://doi.org/10.1016/j.cell.2022.02.017 

Chen, K., Q. Hu, et al. (2022). "Inhibition of unfolded protein response prevents post-anesthesia neuronal hyperactivity and synapse loss in aged mice." Aging Cell n/a(n/a): e13592. 10.1111/acel.13592

Livezey, J. A., P. S. Sachdeva, et al. (2022). "Not optimal, just noisy: the geometry of correlated variability leads to highly suboptimal sensory coding." bioRxiv: 2022.2003.2008.483488. https://doi.org/10.1101/2022.03.08.483488

Park, A., V. Croset, et al. (2022). "Gliotransmission of D-serine promotes thirst-directed behaviors in Drosophila</em&gt." bioRxiv: 2022.2003.2007.483255. https://doi.org/10.1101/2022.03.07.483255

Weiler, S., D. Guggiana Nilo, et al. (2022). "Orientation and direction tuning align with dendritic morphology and spatial connectivity in mouse visual cortex." Current Biology. https://doi.org/10.1016/j.cub.2022.02.048

Hösli, L., N. Binini, et al. (2022). "Decoupling astrocytes in adult mice impairs synaptic plasticity and spatial learning." Cell Reports 38(10): 110484. https://doi.org/10.1016/j.celrep.2022.110484

Yildirim, M., C. Delepine, et al. (2022). "Label-free three-photon imaging of intact human cerebral organoids: tracking early events in brain development and deficits in Rett Syndrome." bioRxiv: 2022.2002.2028.482282. https://doi.org/10.1101/2022.02.28.482282

Gellner, A.-K., A. Sitter, et al. (2022). "Stress vulnerability shapes disruption of motor cortical neuroplasticity." Translational Psychiatry 12(1): 91. https://doi.org/10.1038/s41398-022-01855-8

Handley, E. E., L. A. Reale, et al. (2022). "Estrogen Enhances Dendrite Spine Function and Recovers Deficits in Neuroplasticity in the prpTDP-43A315T Mouse Model of Amyotrophic Lateral Sclerosis." Molecular Neurobiology. https://doi.org/10.1007/s12035-022-02742-5

Heintz, T. G., A. J. Hinojosa, et al. (2022). "Opposite forms of adaptation in mouse visual cortex are controlled by distinct inhibitory microcircuits." Nature Communications 13(1): 1031. 10.1038/s41467-022-28635-8

Turner, N. L., T. Macrina, et al. (2022). "Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity." Cell. https://doi.org/10.1016/j.cell.2022.01.023

Murphy-Baum, B. L. and G. B. Awatramani (2022). "Parallel processing in active dendrites during periods of intense spiking activity." Cell Reports 38(8): 110412. https://doi.org/10.1016/j.celrep.2022.110412

Xie, Y., A. T. Kuan, et al. (2022). "Astrocyte-neuron crosstalk through Hedgehog signaling mediates cortical synapse development." Cell Reports 38(8): 110416. https://doi.org/10.1016/j.celrep.2022.110416

Ahn, S. J., N. E. Ruiz-Uribe, et al. (2020). "Label-free assessment of hemodynamics in individual cortical brain vessels using third harmonic generation microscopy." Biomedical Optics Express 11(5): 2665-2678. 10.1364/boe.385848

Arkhipov, A., N. W. Gouwens, et al. (2018). "Visual physiology of the layer 4 cortical circuit in silico." PLOS Computational Biology 14(11): e1006535. 10.1371/journal.pcbi.1006535

Baker, C. A., C. McKellar, et al. (2021). "Neural Network Organization for Courtship Song Feature Detection in Drosophila</em&gt." bioRxiv: 2020.2010.2008.332148. 10.1101/2020.10.08.332148

Bakker, G.-J., S. Weischer, et al. (2022). "Intravital deep-tumor single-beam 3-photon, 4-photon, and harmonic microscopy." eLife 11: e63776. 10.7554/eLife.63776

Bale, M. R., M. Bitzidou, et al. (2020). "Learning a tactile sequence induces selectivity to action decisions and outcomes in the mouse somatosensory cortex." bioRxiv: 2020.2004.2017.037143. 10.1101/2020.04.17.037143

Barz, C. S., P. M. Garderes, et al. (2021). "Functional and Structural Properties of Highly Responsive Somatosensory Neurons in Mouse Barrel Cortex." Cerebral Cortex 31(10): 4533-4553. 10.1093/cercor/bhab104

Bounds, H. A., M. Sadahiro, et al. (2021). "Multifunctional Cre-dependent transgenic mice for high-precision all-optical interrogation of neural circuits." bioRxiv: 2021.2010.2005.463223. 10.1101/2021.10.05.463223

Deverett, B., S. A. Koay, et al. (2018). "A cerebellar role in evidence-guided decision-making." bioRxiv: 343095. 10.1101/343095

Engelhard, B., J. Finkelstein, et al. (2018). "Specialized and spatially organized coding of sensory, motor, and cognitive variables in midbrain dopamine neurons." bioRxiv: 456194. 10.1101/456194

Gaffield, M. A. and J. M. Christie (2021). "The cerebellum encodes and influences the initiation and termination of discontinuous movements." bioRxiv: 2021.2006.2024.449622. 10.1101/2021.06.24.449622

Hong, S. Z., L. Mesik, et al. (2021). "Norepinephrine Potentiates and Serotonin Depresses Visual Cortical Responses by Transforming Eligibility Traces." bioRxiv: 2021.2006.2022.449441. 10.1101/2021.06.22.449441

Klapoetke, N. C., A. Nern, et al. (2017). "Ultra-selective looming detection from radial motion opponency." Nature 551(7679): 237-241. 10.1038/nature24626

Lyall, E. H., D. P. Mossing, et al. (2020). "Synthesis of higher order feature codes through stimulus-specific supra-linear summation." bioRxiv: 2020.2006.2024.169359. 10.1101/2020.06.24.169359

Nagai, J., A. Bellafard, et al. (2021). "Specific and behaviorally consequential astrocyte Gq GPCR signaling attenuation in vivo with iβARK." Neuron 109(14): 2256-2274.e2259. https://doi.org/10.1016/j.neuron.2021.05.023

Orlova, N., F. Najafi, et al. (2021). "Multiplane Mesoscope reveals distinct cortical interactions following expectation violations." bioRxiv: 2020.2010.2006.328294. 10.1101/2020.10.06.328294

Pichler, P. and L. Lagnado (2018). "Hair cells with heterogeneous transfer characteristics encode mechanical stimuli in the lateral line of zebrafish." bioRxiv: 261669. 10.1101/261669

Rübel, O., A. Tritt, et al. (2021). "The Neurodata Without Borders ecosystem for neurophysiological data science." bioRxiv: 2021.2003.2013.435173. 10.1101/2021.03.13.435173

Sharma, A., A. Goring, et al. (2021). "Multiscale molecular profiling of pathological bone resolves sexually dimorphic control of extracellular matrix composition." Disease Models & Mechanisms 14(3). 10.1242/dmm.048116

Shin, J. (2021). "Perirhinal feedback input controls neocortical memory formation via layer 1." 

Stein, I. S., T. C. Hill, et al. (2019). Two-Photon Glutamate Uncaging to Study Structural and Functional Plasticity of Dendritic Spines. Multiphoton Microscopy. E. Hartveit. New York, NY, Springer New York: 65-85. 10.1007/978-1-4939-9702-2_4

Takemura, S.-y., Y. Aso, et al. (2017). "A connectome of a learning and memory center in the adult Drosophila brain." eLife 6: e26975. 10.7554/eLife.26975

Vierock, J., S. Rodriguez-Rozada, et al. (2021). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons." Nature Communications 12(1): 4527. 10.1038/s41467-021-24759-5

Westermann, L. M., L. Fleischhauer, et al. (2020). "Imbalanced cellular metabolism compromises cartilage homeostasis and joint function in a mouse model of mucolipidosis type III gamma." Disease Models & Mechanisms 13(11). 10.1242/dmm.046425

Zhou, P., J. Reimer, et al. (2020). "EASE: EM-Assisted Source Extraction from calcium imaging data." bioRxiv: 2020.2003.2025.007468. 10.1101/2020.03.25.007468

Aggarwal, A., R. Liu, et al. (2022). "Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission." bioRxiv: 2022.2002.2013.480251. https://doi.org/10.1101/2022.02.13.480251

Bakker, G.-J., S. Weischer, et al. (2022). "Intravital deep-tumor single-beam 3-photon, 4-photon, and harmonic microscopy." eLife 11: e63776. 10.7554/eLife.63776

Barbara, R., M. N. Kantharaju, et al. (2022). "PyZebraScope: an open-source platform for brain-wide neural activity imaging in zebrafish." bioRxiv: 2022.2002.2013.480249. https://doi.org/10.1101/2022.02.13.480249

Adoff, M. D., J. R. Climer, et al. (2021). "The functional organization of excitatory synaptic input to place cells." Nature Communications 12(1): 3558. 10.1038/s41467-021-23829-y

Afrashteh, N., S. Inayat, et al. (2021). "Spatiotemporal structure of sensory-evoked and spontaneous activity revealed by mesoscale imaging in anesthetized and awake mice." Cell Reports 37(10): 110081. https://doi.org/10.1016/j.celrep.2021.110081

Au - Jongbloets, B. C., L. Au - Ma, et al. (2019). "Visualizing Protein Kinase A Activity In Head-fixed Behaving Mice Using In Vivo Two-photon Fluorescence Lifetime Imaging Microscopy." JoVE(148): e59526. doi:10.3791/59526

Au - Wang, Z., S. Au - McCracken, et al. (2021). "Transpupillary Two-photon In vivo Imaging of the Mouse Retina." JoVE(168): e61970. doi:10.3791/61970

Brown, J., I. Antón Oldenburg, et al. (2020). "Spatial integration during active tactile sensation drives elementary shape perception." bioRxiv: 2020.2003.2016.994145. 10.1101/2020.03.16.994145

Chen, C., S. Agrawal, et al. (2021). "Functional architecture of neural circuits for leg proprioception in Drosophila." Current Biology 31(23): 5163-5175.e5167. https://doi.org/10.1016/j.cub.2021.09.035

Cheng, Z., Y. Han, et al. (2021). "Probing neuronal functions with precise and targeted laser ablation in the living cortex." Optica 8(12): 1559-1572. 10.1364/optica.433562

Churgin, M. A., D. Lavrentovich, et al. (2021). "Neural correlates of individual odor preference in Drosophila</em&gt." bioRxiv: 2021.2012.2024.474127. 10.1101/2021.12.24.474127

Collins, L., L. Boddington, et al. (2021). "Vagus nerve stimulation induces widespread cortical and behavioral activation." Current Biology 31(10): 2088-2098.e2083. https://doi.org/10.1016/j.cub.2021.02.049

Deverett, B., S. A. Koay, et al. (2018). "Cerebellar involvement in an evidence-accumulation decision-making task." eLife 7: e36781. 10.7554/eLife.36781

Doron, G., N. Shin Jiyun, et al. (2020). "Perirhinal input to neocortical layer 1 controls learning." Science 370(6523): eaaz3136. 10.1126/science.aaz3136

Dürst, C. D., J. S. Wiegert, et al. (2019). "High-speed imaging of glutamate release with genetically encoded sensors." Nature Protocols 14(5): 1401-1424. 10.1038/s41596-019-0143-9

Engelhard, B., J. Finkelstein, et al. (2019). "Specialized coding of sensory, motor and cognitive variables in VTA dopamine neurons." Nature 570(7762): 509-513. 10.1038/s41586-019-1261-9

Esmaeili, V., K. Tamura, et al. (2021). "Rapid suppression and sustained activation of distinct cortical regions for a delayed sensory-triggered motor response." Neuron 109(13): 2183-2201.e2189. https://doi.org/10.1016/j.neuron.2021.05.005

Fleming, W., S. Jewell, et al. (2021). "Inferring spikes from calcium imaging in dopamine neurons." PLOS ONE 16(6): e0252345. 10.1371/journal.pone.0252345

Fratzl, A., A. M. Koltchev, et al. (2021). "Flexible inhibitory control of visually evoked defensive behavior by the ventral lateral geniculate nucleus." Neuron 109(23): 3810-3822.e3819. https://doi.org/10.1016/j.neuron.2021.09.003

Gray Shawn, R., L. Ye, et al. "Noradrenergic terminal short-term potentiation enables modality-selective integration of sensory input and vigilance state." Science Advances 7(51): eabk1378. 10.1126/sciadv.abk1378

Kafashan, M., A. Jaffe, et al. (2020). "Scaling of information in large neural populations reveals signatures of information-limiting correlations." bioRxiv: 2020.2001.2010.902171. 10.1101/2020.01.10.902171

Keller, A. J., M. Dipoppa, et al. (2020). "A Disinhibitory Circuit for Contextual Modulation in Primary Visual Cortex." Neuron 108(6): 1181-1193.e1188. https://doi.org/10.1016/j.neuron.2020.11.013

Kline, A. M., D. A. Aponte, et al. (2021). "Inhibitory gating of coincidence-dependent sensory binding in secondary auditory cortex." Nature Communications 12(1): 4610. 10.1038/s41467-021-24758-6

Lee, J. S., J. J. Briguglio, et al. (2020). "The Statistical Structure of the Hippocampal Code for Space as a Function of Time, Context, and Value." Cell 183(3): 620-635.e622. https://doi.org/10.1016/j.cell.2020.09.024

Lu, J., A. H. Behbahani, et al. (2022). "Transforming representations of movement from body- to world-centric space." Nature 601(7891): 98-104. 10.1038/s41586-021-04191-x

Lyall, E. H., D. P. Mossing, et al. (2021). "Synthesis of a comprehensive population code for contextual features in the awake sensory cortex." eLife 10: e62687. 10.7554/eLife.62687

Massengill, C. I., L. Bayless-Edwards, et al. (2021). "Highly sensitive genetically-encoded sensors for population and subcellular imaging of cAMP in vivo</em&gt." bioRxiv: 2021.2008.2027.457999. 10.1101/2021.08.27.457999

Melander, J. B., A. Nayebi, et al. (2021). "Distinct in vivo dynamics of excitatory synapses onto cortical pyramidal neurons and parvalbumin-positive interneurons." Cell Reports 37(6): 109972. https://doi.org/10.1016/j.celrep.2021.109972

Men, Y., L. Ye, et al. (2020). "Astroglial FMRP deficiency cell-autonomously up-regulates miR-128 and disrupts developmental astroglial mGluR5 signaling." Proceedings of the National Academy of Sciences 117(40): 25092. 10.1073/pnas.2014080117

Mittal, A. M., D. Gupta, et al. (2020). "Multiple network properties overcome random connectivity to enable stereotypic sensory responses." Nature Communications 11(1): 1023. 10.1038/s41467-020-14836-6

Orsolic, I., M. Rio, et al. (2021). "Mesoscale cortical dynamics reflect the interaction of sensory evidence and temporal expectation during perceptual decision-making." Neuron 109(11): 1861-1875.e1810. https://doi.org/10.1016/j.neuron.2021.03.031

Pacheco, D. A., S. Y. Thiberge, et al. (2021). "Auditory activity is diverse and widespread throughout the central brain of Drosophila." Nature Neuroscience 24(1): 93-104. 10.1038/s41593-020-00743-y

Perez-Alvarez, A., B. C. Fearey, et al. (2020). "Freeze-frame imaging of synaptic activity using SynTagMA." Nature Communications 11(1): 2464. 10.1038/s41467-020-16315-4

Pisano, F., M. Pisanello, et al. (2018). "Multipoint and large volume fiber photometry with a single tapered optical fiber implant." bioRxiv: 455766. 10.1101/455766

Porges, E., D. Jenner, et al. (2021). "Antibiotic-Loaded Polymersomes for Clearance of Intracellular Burkholderia thailandensis." ACS Nano 15(12): 19284-19297. 10.1021/acsnano.1c05309

Puścian, A., H. Benisty, et al. (2020). "NMDAR-Dependent Emergence of Behavioral Representation in Primary Visual Cortex." Cell Reports 32(4): 107970. https://doi.org/10.1016/j.celrep.2020.107970

Scholl, B., D. E. Wilson, et al. (2019). "Functional Logic of Layer 2/3 Inhibitory Connectivity in the Ferret Visual Cortex." Neuron 104(3): 451-457.e453. https://doi.org/10.1016/j.neuron.2019.08.004

Schulze, L., J. Henninger, et al. (2018). "Transparent Danionella translucida as a genetically tractable vertebrate brain model." Nature Methods 15(11): 977-983. 10.1038/s41592-018-0144-6

Schumacher, J. W., M. McCann, et al. (2021). "Selective enhancement of neural coding in V1 underlies fine discrimination learning in tree shrew." bioRxiv: 2021.2001.2010.426145. 10.1101/2021.01.10.426145

Sedigh-Sarvestani, M., K.-S. Lee, et al. (2021). "A sinusoidal transform of the visual field in cortical area V2." bioRxiv: 2020.2012.2008.416651. 10.1101/2020.12.08.416651

Severson, K. S., D. Xu, et al. (2017). "Active Touch and Self-Motion Encoding by Merkel Cell-Associated Afferents." Neuron 94(3): 666-676.e669. https://doi.org/10.1016/j.neuron.2017.03.045

Shakhi, P. K., M. M. Bijeesh, et al. (2021). "An in-house constructed dual channel confocal fluorescence microscope for biomolecular imaging." OSA Continuum 4(8): 2177-2192. 10.1364/osac.428601

Stringer, C., M. Michaelos, et al. (2021). "High-precision coding in visual cortex." Cell 184(10): 2767-2778.e2715. https://doi.org/10.1016/j.cell.2021.03.042

Sumser, A., M. Joesch, et al. (2021). "An extended toolkit for production and use of RVdG-CVS-N2c rabies viral vectors uncovers hidden hippocampal connections." bioRxiv: 2021.2012.2023.474014. 10.1101/2021.12.23.474014

Tang, L. and M. J. Higley (2020). "Layer 5 Circuits in V1 Differentially Control Visuomotor Behavior." Neuron 105(2): 346-354.e345. https://doi.org/10.1016/j.neuron.2019.10.014

Turner, N. L., T. Macrina, et al. (2020). "Multiscale and multimodal reconstruction of cortical structure and function." bioRxiv: 2020.2010.2014.338681. 10.1101/2020.10.14.338681

Unger, E. K., J. P. Keller, et al. (2020). "Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning." Cell 183(7): 1986-2002.e1926. https://doi.org/10.1016/j.cell.2020.11.040

Vavladeli, A., T. Daigle, et al. (2020). "Projection-specific Activity of Layer 2/3 Neurons Imaged in Mouse Primary Somatosensory Barrel Cortex During a Whisker Detection Task." Function 1(1): zqaa008. 10.1093/function/zqaa008

Yang, W., M. Chini, et al. (2021). "Anesthetics fragment hippocampal network activity, alter spine dynamics, and affect memory consolidation." PLOS Biology 19(4): e3001146. 10.1371/journal.pbio.3001146

Yildirim, M., M. Hu, et al. (2019). "Label-free characterization of visual cortical areas in awake mice via three-photon microscopy reveals correlations between functional maps and structural substrates." bioRxiv: 790436. 10.1101/790436

Zhang, J.-F., B. Liu, et al. (2021). "An ultrasensitive biosensor for high-resolution kinase activity imaging in awake mice." Nature Chemical Biology 17(1): 39-46. 10.1038/s41589-020-00660-y

Zhang, K., J. Hu, et al. (2021). "Deep compressed imaging via optimized pattern scanning." Photonics Research 9(3): B57-B70. 10.1364/prj.410556

Zhao, Z., J. L. Zung, et al. (2020). "Chemical signatures of human odour generate a unique neural code in the brain of Aedes aegypti mosquitoes." bioRxiv: 2020.2011.2001.363861. 10.1101/2020.11.01.363861

Adam, E. M., T. Johns, et al. (2021). "Dynamic control of visually-guided locomotion through cortico-subthalamic projections." bioRxiv: 2020.2002.2005.936443. 10.1101/2020.02.05.936443

Allen, C. H., D. Ahmed, et al. (2021). "Label-free two-photon imaging of mitochondrial activity in murine macrophages stimulated with bacterial and viral ligands." Scientific Reports 11(1): 14081. 10.1038/s41598-021-93043-9

Aponte, D. A., G. Handy, et al. (2021). "Recurrent network dynamics shape direction selectivity in primary auditory cortex." Nature Communications 12(1): 314. 10.1038/s41467-020-20590-6

Arttamangkul, S., E. J. Platt, et al. (2021). "Functional independence of endogenous μ- and δ-opioid receptors co-expressed in cholinergic interneurons." eLife 10: e69740. 10.7554/eLife.69740

Arttamangkul, S., A. Plazek, et al. (2019). "Visualizing endogenous opioid receptors in living neurons using ligand-directed chemistry." eLife 8: e49319. 10.7554/eLife.49319

Chen, D., M. Ren, et al. (2020). "Design of a multi-modality DMD-based two-photon microscope system." Optics Express 28(20): 30187-30198. 10.1364/oe.404652

Efimova, V. S., L. V. Isaeva, et al. (2019). "Analysis of In Vivo Activity of the Bovine Cholesterol Hydroxylase/Lyase System Proteins Expressed in Escherichia coli." Molecular Biotechnology 61(4): 261-273. 10.1007/s12033-019-00158-6

Egger, R., Y. Tupikov, et al. (2020). "Local Axonal Conduction Shapes the Spatiotemporal Properties of Neural Sequences." Cell 183(2): 537-548.e512. https://doi.org/10.1016/j.cell.2020.09.019

Haidey, J. N., G. Peringod, et al. (2021). "Astrocytes regulate ultra-slow arteriole oscillations via stretch-mediated TRPV4-COX-1 feedback." Cell Reports 36(5): 109405. https://doi.org/10.1016/j.celrep.2021.109405

Herdzik, K. P., K. N. Bourdakos, et al. (2020). "Multimodal spectral focusing CARS and SFG microscopy with a tailored coherent continuum from a microstructured fiber." Applied Physics B 126(5): 84. 10.1007/s00340-020-7406-6

Hige, T., Y. Aso, et al. (2015). "Heterosynaptic Plasticity Underlies Aversive Olfactory Learning in Drosophila." Neuron 88(5): 985-998. https://doi.org/10.1016/j.neuron.2015.11.003

James, B., P. Piekarz, et al. (2021). "Multivesicular Release Increases the Efficiency of Information Transmission at Sensory Synapses." bioRxiv: 2021.2011.2004.467256. 10.1101/2021.11.04.467256

Ji, X., S. Saha, et al. (2017). "The Sodium Channel β4 Auxiliary Subunit Selectively Controls Long-Term Depression in Core Nucleus Accumbens Medium Spiny Neurons." Frontiers in Cellular Neuroscience 11. 10.3389/fncel.2017.00017

Kazemipour, A., O. Novak, et al. (2019). "Kilohertz frame-rate two-photon tomography." Nature Methods 16(8): 778-786. 10.1038/s41592-019-0493-9

Keller, A. J., M. M. Roth, et al. (2020). "Feedback generates a second receptive field in neurons of the visual cortex." Nature 582(7813): 545-549. 10.1038/s41586-020-2319-4

Kim, B., H. Le, et al. (2020). "High-speed combined reflectance confocal and moxifloxacin based two-photon microscopy." Biomedical Optics Express 11(3): 1555-1567. 10.1364/boe.385763

Kim, H., J. Homann, et al. (2019). "A Long Timescale Stimulus History Effect in the Primary Visual Cortex." bioRxiv: 585539. 10.1101/585539

Kim, S. S., A. M. Hermundstad, et al. (2019). "Generation of stable heading representations in diverse visual scenes." Nature 576(7785): 126-131. 10.1038/s41586-019-1767-1

Koekkoek, L. L., M. Slomp, et al. (2021). "Disruption of lateral hypothalamic calorie detection by a free choice high fat diet." The FASEB Journal 35(9): e21804. https://doi.org/10.1096/fj.202100762R

Latifi, S., S. Mitchell, et al. (2020). "Neuronal Network Topology Indicates Distinct Recovery Processes after Stroke." Cerebral Cortex 30(12): 6363-6375. 10.1093/cercor/bhaa191

Liu, R., N. Ball, et al. (2019). "Aberration-free multi-plane imaging of neural activity from the mammalian brain using a fast-switching liquid crystal spatial light modulator." Biomedical Optics Express 10(10): 5059-5080. 10.1364/boe.10.005059

Liu, Y., G. Foustoukos, et al. (2022). "Axonal and Dendritic Morphology of Excitatory Neurons in Layer 2/3 Mouse Barrel Cortex Imaged Through Whole-Brain Two-Photon Tomography and Registered to a Digital Brain Atlas." Frontiers in neuroanatomy 15: 791015-791015. 10.3389/fnana.2021.791015

Liu, Y., Y. Xin, et al. (2021). "A cortical circuit mechanism for structural knowledge-based flexible sensorimotor decision-making." Neuron 109(12): 2009-2024.e2006. https://doi.org/10.1016/j.neuron.2021.04.014

Mahn, M., I. Saraf-Sinik, et al. (2021). "Optogenetic silencing of neurotransmitter release with a naturally occurring invertebrate rhodopsin." bioRxiv: 2021.2002.2018.431673. 10.1101/2021.02.18.431673

Moura, C. C., K. N. Bourdakos, et al. (2019). "Live-imaging of Bioengineered Cartilage Tissue using Multimodal Non-linear Molecular Imaging." Scientific Reports 9(1): 5561. 10.1038/s41598-019-41466-w

Oda, K., J. Vierock, et al. (2018). "Crystal structure of the red light-activated channelrhodopsin Chrimson." Nature Communications 9(1): 3949. 10.1038/s41467-018-06421-9

Perez-Alvarez, A., F. Huhn, et al. (2021). "Freeze-Frame Imaging of Dendritic Calcium Signals With TubuTag." Frontiers in Molecular Neuroscience 14. 10.3389/fnmol.2021.635820

Peron, S., R. Pancholi, et al. (2020). "Recurrent interactions in local cortical circuits." Nature 579(7798): 256-259. 10.1038/s41586-020-2062-x

Radvansky, B. A., J. Y. Oh, et al. (2021). "Behavior determines the hippocampal spatial mapping of a multisensory environment." Cell Reports 36(5): 109444. https://doi.org/10.1016/j.celrep.2021.109444

Rikhye, R. V., M. Yildirim, et al. (2021). "Reliable Sensory Processing in Mouse Visual Cortex through Cooperative Interactions between Somatostatin and Parvalbumin Interneurons." The Journal of Neuroscience 41(42): 8761. 10.1523/jneurosci.3176-20.2021

Runyan, C. A., E. Piasini, et al. (2017). "Distinct timescales of population coding across cortex." Nature 548(7665): 92-96. 10.1038/nature23020

Shuster, S. A., M. J. Wagner, et al. (2021). "The relationship between birth timing, circuit wiring, and physiological response properties of cerebellar granule cells." Proceedings of the National Academy of Sciences 118(23): e2101826118. 10.1073/pnas.2101826118

Smith, G. B. and D. Fitzpatrick (2016). Viral Injection and Cranial Window Implantation for In Vivo Two-Photon Imaging. High-Resolution Imaging of Cellular Proteins: Methods and Protocols. S. D. Schwartzbach, O. Skalli and T. Schikorski. New York, NY, Springer New York: 171-185. 10.1007/978-1-4939-6352-2_10

Sridharan, S., M. A. Gajowa, et al. (2022). "High-performance microbial opsins for spatially and temporally precise perturbations of large neuronal networks." Neuron. https://doi.org/10.1016/j.neuron.2022.01.008

Streich, L., J. C. Boffi, et al. (2021). "High-resolution structural and functional deep brain imaging using adaptive optics three-photon microscopy." Nature Methods 18(10): 1253-1258. 10.1038/s41592-021-01257-6

Takahashi, T., K. P. Herdzik, et al. (2021). "Selective Imaging of Microplastic and Organic Particles in Flow by Multimodal Coherent Anti-Stokes Raman Scattering and Two-Photon Excited Autofluorescence Analysis." Analytical Chemistry 93(12): 5234-5240. 10.1021/acs.analchem.0c05474

Tang, A. D., W. Bennett, et al. (2021). "Subthreshold repetitive transcranial magnetic stimulation drives structural synaptic plasticity in the young and aged motor cortex." Brain Stimulation 14(6): 1498-1507. https://doi.org/10.1016/j.brs.2021.10.001

Tyson, A. L., M. Vélez-Fort, et al. (2022). "Accurate determination of marker location within whole-brain microscopy images." Scientific Reports 12(1): 867. 10.1038/s41598-021-04676-9

Valente, M., G. Pica, et al. (2021). "Correlations enhance the behavioral readout of neural population activity in association cortex." Nature Neuroscience 24(7): 975-986. 10.1038/s41593-021-00845-1

Wang, F., K. Wang, et al. (2020). "Circuit and Behavioral Mechanisms of Sexual Rejection by Drosophila Females." Current Biology 30(19): 3749-3760.e3743. https://doi.org/10.1016/j.cub.2020.07.083

Wang, K., F. Wang, et al. (2021). "Neural circuit mechanisms of sexual receptivity in Drosophila females." Nature 589(7843): 577-581. 10.1038/s41586-020-2972-7

Xiong, W.-H., M. Qin, et al. (2021). "Myristoylation alone is sufficient for PKA catalytic subunits to associate with the plasma membrane to regulate neuronal functions." Proceedings of the National Academy of Sciences 118(15): e2021658118. 10.1073/pnas.2021658118

Yatsenko, D., T. Nguyen, et al. (2021). "DataJoint Elements: Data Workflows for Neurophysiology." bioRxiv: 2021.2003.2030.437358. 10.1101/2021.03.30.437358

Yildirim, M., H. Sugihara, et al. (2019). "Functional imaging of visual cortical layers and subplate in awake mice with optimized three-photon microscopy." Nature Communications 10(1): 177. 10.1038/s41467-018-08179-6

Yuhao, Y., S. Niraj, et al. (2020). Monitoring uptake of palmitic acid by glioma cells using stimulated Raman scattering microscopy. Proc.SPIE. 10.1117/12.2546260

Zhang, D., E. Redington, et al. (2021). "Rational engineering of ratiometric calcium sensors with bright green and red fluorescent proteins." Communications Biology 4(1): 924. 10.1038/s42003-021-02452-z

Zhou, A., S. A. Engelmann, et al. (2022). "Evaluation of resonant scanning as a high-speed imaging technique for two-photon imaging of cortical vasculature." Biomedical Optics Express 13(3): 1374-1385. 10.1364/boe.448473

Zhu, Y. and F. Gabbiani (2018). Combined Two-Photon Calcium Imaging and Single-Ommatidium Visual Stimulation to Study Fine-Scale Retinotopy in Insects. Extracellular Recording Approaches. R. V. Sillitoe. New York, NY, Springer New York: 185-206. 10.1007/978-1-4939-7549-5_10

Kim, S., M. L. Wallace, et al. (2022). "Co-packaging of opposing neurotransmitters in individual synaptic vesicles in the central nervous system." Neuron. https://doi.org/10.1016/j.neuron.2022.01.007

Lei, Z., K. Henderson, et al. (2022). "A neural circuit linking learning and sleep in Drosophila long-term memory." Nature Communications 13(1): 609. https://doi.org/10.1038/s41467-022-28256-1

Deschamps, J. and J. Ries (2020). "EMU: reconfigurable graphical user interfaces for Micro-Manager." BMC Bioinformatics 21(1): 456. 10.1186/s12859-020-03727-8

Fast, A., A. Lal, et al. (2020). "FLAME: Macroscopic imaging with microscopic resolution. Optical biopsy of human skin." bioRxiv: 2020.2001.2031.927590. 10.1101/2020.01.31.927590

Gaffield, M. A., S. B. Amat, et al. (2015). "Chronic imaging of movement-related Purkinje cell calcium activity in awake behaving mice." Journal of Neurophysiology 115(1): 413-422. 10.1152/jn.00834.2015

Gaffield, M. A. and J. M. Christie (2017). "Movement Rate Is Encoded and Influenced by Widespread, Coherent Activity of Cerebellar Molecular Layer Interneurons." The Journal of Neuroscience 37(18): 4751. 10.1523/jneurosci.0534-17.2017

Gill, J. V., G. M. Lerman, et al. (2020). "Precise Holographic Manipulation of Olfactory Circuits Reveals Coding Features Determining Perceptual Detection." Neuron 108(2): 382-393.e385. https://doi.org/10.1016/j.neuron.2020.07.034

Giovannucci, A., A. Badura, et al. (2017). "Cerebellar granule cells acquire a widespread predictive feedback signal during motor learning." Nature Neuroscience 20(5): 727-734. 10.1038/nn.4531

Graves, A. R., R. H. Roth, et al. (2021). "Visualizing synaptic plasticity in vivo by large-scale imaging of endogenous AMPA receptors." eLife 10: e66809. 10.7554/eLife.66809

Griffiths, V. A., A. M. Valera, et al. (2020). "Real-time 3D movement correction for two-photon imaging in behaving animals." Nature Methods 17(7): 741-748. 10.1038/s41592-020-0851-7

Henschke, J. U., E. Dylda, et al. (2020). "Reward Association Enhances Stimulus-Specific Representations in Primary Visual Cortex." Current Biology 30(10): 1866-1880.e1865. https://doi.org/10.1016/j.cub.2020.03.018

Jayant, K., J. J. Hirtz, et al. (2017). "Targeted intracellular voltage recordings from dendritic spines using quantum-dot-coated nanopipettes." Nature Nanotechnology 12(4): 335-342. 10.1038/nnano.2016.268

Ji, X., S. Saha, et al. (2017). "Dopamine Receptors Differentially Control Binge Alcohol Drinking-Mediated Synaptic Plasticity of the Core Nucleus Accumbens Direct and Indirect Pathways." The Journal of Neuroscience 37(22): 5463. 10.1523/jneurosci.3845-16.2017

Kim Sung, S., H. Rouault, et al. (2017). "Ring attractor dynamics in the Drosophila central brain." Science 356(6340): 849-853. 10.1126/science.aal4835

Klioutchnikov, A., D. J. Wallace, et al. (2020). "Three-photon head-mounted microscope for imaging deep cortical layers in freely moving rats." Nature Methods 17(5): 509-513. 10.1038/s41592-020-0817-9

Li, B., C. Wu, et al. (2020). "An adaptive excitation source for high-speed multiphoton microscopy." Nature Methods 17(2): 163-166. 10.1038/s41592-019-0663-9

Liu, H., Y. Du, et al. (2017). "Sealing of Immersion Deuterium Dioxide and Its Application to Signal Maintenance for Ex-Vivo and In-Vivo Multiphoton Microscopy Excited at the 1700-nm Window." IEEE Photonics Journal 9(5): 1-8. 10.1109/jphot.2017.2737012

Liu, H., J. Wang, et al. (2018). "Ex and in vivo characterization of the wavelength-dependent 3-photon action cross-sections of red fluorescent proteins covering the 1700-nm window." Journal of Biophotonics 11(7): e201700351. https://doi.org/10.1002/jbio.201700351

Liu, R., N. Ball, et al. (2018). "Multi-plane Imaging of Neural Activity From the Mammalian Brain Using a Fast-switching Liquid Crystal Spatial Light Modulator." bioRxiv: 506618. 10.1101/506618

Liu, R., Z. Li, et al. (2019). "Direct wavefront sensing enables functional imaging of infragranular axons and spines." Nature Methods 16(7): 615-618. 10.1038/s41592-019-0434-7

Ma, Z., H. Liu, et al. (2020). "Stability of motor cortex network states during learning-associated neural reorganizations." Journal of Neurophysiology 124(5): 1327-1342. 10.1152/jn.00061.2020

Marvin, J. S., B. Scholl, et al. (2018). "Stability, affinity, and chromatic variants of the glutamate sensor iGluSnFR." Nature Methods 15(11): 936-939. 10.1038/s41592-018-0171-3

Moran, A. K., T. P. Eiting, et al. (2021). "Dynamics of Glutamatergic Drive Underlie Diverse Responses of Olfactory Bulb Outputs In Vivo." eNeuro 8(2): ENEURO.0110-0121.2021. 10.1523/eneuro.0110-21.2021

Pafundo, D. E., M. A. Nicholas, et al. (2016). "Top-Down-Mediated Facilitation in the Visual Cortex Is Gated by Subcortical Neuromodulation." The Journal of Neuroscience 36(10): 2904. 10.1523/jneurosci.2909-15.2016

Pisanello, M., F. Pisano, et al. (2019). "The Three-Dimensional Signal Collection Field for Fiber Photometry in Brain Tissue." Frontiers in Neuroscience 13. 10.3389/fnins.2019.00082

Pologruto, T. A., B. L. Sabatini, et al. (2003). "ScanImage: Flexible software for operating laser scanning microscopes." BioMedical Engineering OnLine 2(1): 13. 10.1186/1475-925x-2-13

Pottackal, J., J. H. Singer, et al. (2021). "Computational and Molecular Properties of Starburst Amacrine Cell Synapses Differ With Postsynaptic Cell Type." Frontiers in Cellular Neuroscience 15. 10.3389/fncel.2021.660773

Reimer, J., M. J. McGinley, et al. (2016). "Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex." Nature Communications 7(1): 13289. 10.1038/ncomms13289

Song, A., A. S. Charles, et al. (2017). "Volumetric two-photon imaging of neurons using stereoscopy (vTwINS)." Nature Methods 14(4): 420-426. 10.1038/nmeth.4226

Takasaki, K. T., D. Tsyboulski, et al. (2019). "Dual-plane 3-photon microscopy with remote focusing." Biomedical Optics Express 10(11): 5585-5599. 10.1364/boe.10.005585

Thomas, C. I., M. A. Ryan, et al. (2021). "Targeting Functionally Characterized Synaptic Architecture Using Inherent Fiducials and 3D Correlative Microscopy." Microscopy and Microanalysis 27(1): 156-169. Doi: 10.1017/s1431927620024757

Valle, A. F. and J. D. Seelig (2019). "Two-photon Bessel beam tomography for fast volume imaging." Optics Express 27(9): 12147-12162. 10.1364/oe.27.012147

Wagner, M. J., J. Savall, et al. (2021). "A neural circuit state change underlying skilled movements." Cell 184(14): 3731-3747.e3721. https://doi.org/10.1016/j.cell.2021.06.001

Wang, K., Y. Pan, et al. (2021). "Deep-skin multiphoton microscopy of lymphatic vessels excited at the 1700-nm window in vivo." Biomedical Optics Express 12(10): 6474-6484. 10.1364/boe.437482

Wang, K., W. Wen, et al. (2017). "Order-of-magnitude multiphoton signal enhancement based on characterization of absorption spectra of immersion oils at the 1700-nm window." Optics Express 25(6): 5909-5916. 10.1364/oe.25.005909

Yildirim, M., M. Hu, et al. (2020). "Quantitative third-harmonic generation imaging of mouse visual cortex areas reveals correlations between functional maps and structural substrates." Biomedical Optics Express 11(10): 5650-5673. 10.1364/boe.396962

Dhanya, S. K. and G. Hasan (2022). "Two photon imaging of calcium responses in murine Purkinje neurons." STAR Protocols 3(1): 101105. https://doi.org/10.1016/j.xpro.2021.101105

Tyson, A. L., M. Vélez-Fort, et al. (2022). "Accurate determination of marker location within whole-brain microscopy images." Scientific Reports 12(1): 867. https://doi.org/10.1038/s41598-021-04676-9

Hartveit, E., M. L. Veruki, et al. (2022). "Dendritic morphology of an inhibitory retinal interneuron enables simultaneous local and global synaptic integration." The Journal of Neuroscience: JN-RM-0695-0621. https://doi.org/10.1523/JNEUROSCI.0695-21.2021

Sun, B., M. Wang, et al. (2022). "Intravital Imaging of the Murine Subventricular Zone with Three Photon Microscopy." Cerebral Cortex: bhab400. https://doi.org/10.1093/cercor/bhab400

Pulin, M., K. E. Stockhausen, et al. (2022). "Orthogonally-polarized excitation for improved two-photon and second-harmonic-generation microscopy, applied to neurotransmitter imaging with GPCR-based sensors." Biomedical Optics Express 13(2): 777-790. https://doi.org/10.1364/BOE.448760

Tiriac, A., K. Bistrong, et al. (2022). "The influence of spontaneous and visual activity on the development of direction selectivity maps in mouse retina." Cell Reports 38(2): 110225. https://doi.org/10.1016/j.celrep.2021.110225

Ueda, H. H., Y. Nagasawa, et al. (2022). "Chronic neuronal excitation leads to dual metaplasticity in the signaling for structural long-term potentiation." Cell Reports 38(1): 110153. https://doi.org/10.1016/j.celrep.2021.110153

Tsukahara, T., D. H. Brann, et al. (2021). "A transcriptional rheostat couples past activity to future sensory responses." Cell. https://doi.org/10.1016/j.cell.2021.11.022

Heuke, S., I. Rimke, et al. (2021). "Shot-noise limited tunable dual-vibrational frequency stimulated Raman scattering microscopy." Biomedical Optics Express 12(12): 7780-7789. https://doi.org/10.1364/BOE.446348

Zhuang, J., Y. Wang, et al. (2021). "Laminar distribution and arbor density of two functional classes of thalamic inputs to primary visual cortex." Cell Reports 37(2): 109826. https://doi.org/10.1016/j.celrep.2021.109826

Fratzl, A., A. M. Koltchev, et al. (2021). "Flexible inhibitory control of visually evoked defensive behavior by the ventral lateral geniculate nucleus." Neuron. https://doi.org/10.1016/j.neuron.2021.09.003

Abdolghader, P., A. Ridsdale, et al. (2021). "Unsupervised hyperspectral stimulated Raman microscopy image enhancement: denoising and segmentation via one-shot deep learning." Optics Express 29(21): 34205-34219. https://doi.org/10.1364/OE.439662

Goltstein, P. M., S. Reinert, et al. (2021). "Mouse visual cortex areas represent perceptual and semantic features of learned visual categories." Nature Neuroscience 24(10): 1441-1451. https://doi.org/10.1038/s41593-021-00914-5

Wang, K., Y. Pan, et al. (2021). "Deep-skin multiphoton microscopy of lymphatic vessels excited at the 1700-nm window in vivo." Biomedical Optics Express 12(10): 6474-6484. https://doi.org/10.1364/BOE.437482

Agrawal, S., Dickinson, E. S., Sustar, A., Gurung, P., Shepherd, D., Truman, J. W., & Tuthill, J. C. (2020). Central processing of leg proprioception in Drosophila. eLife, 9, e60299. doi: 10.7554/eLife.60299. https://doi.org/10.7554/eLife.60299

Allen, C. H., Ahmed, D., Raiche-Tanner, O., Chauhan, V., Mostaço-Guidolin, L., Cassol, E., & Murugkar, S. (2021). Label-free two-photon imaging of mitochondrial activity in murine macrophages stimulated with bacterial and viral ligands. Scientific Reports, 11(1), 14081. doi: 10.1038/s41598-021-93043-9. https://doi.org/10.1038/s41598-021-93043-9

Allen, C. H., Benjamin, H., Olivia, R.-T., & Sangeeta, M. (2021). Compact silicon photomultiplier detection of multimodal multiphoton microscopy signals. Paper presented at the Proc.SPIE.

Allen, C. H., Hansson, B., Raiche-Tanner, O., & Murugkar, S. (2020). Coherent anti-Stokes Raman scattering imaging using silicon photomultipliers. Optics Letters, 45(8), 2299-2302. doi: 10.1364/ol.390050. http://ol.osa.org/abstract.cfm?URI=ol-45-8-2299

Arttamangkul, S., Plazek, A., Platt, E. J., Jin, H., Murray, T. F., Birdsong, W. T., . . . Williams, J. T. (2019). Visualizing endogenous opioid receptors in living neurons using ligand-directed chemistry. eLife, 8, e49319. doi: 10.7554/eLife.49319. https://doi.org/10.7554/eLife.49319

Aso, Y., Ray, R. P., Long, X., Bushey, D., Cichewicz, K., Ngo, T.-T. B., . . . Rubin, G. M. (2019). Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics. eLife, 8, e49257. doi: 10.7554/eLife.49257. https://doi.org/10.7554/eLife.49257

Bale, M. R., Bitzidou, M., Giusto, E., Kinghorn, P., & Maravall, M. (2021). Sequence Learning Induces Selectivity to Multiple Task Parameters in Mouse Somatosensory Cortex. Current Biology, 31(3), 473-485.e475. doi: https://doi.org/10.1016/j.cub.2020.10.059. https://www.sciencedirect.com/science/article/pii/S096098222031602X

Benbenishty, A., Gadrich, M., Cottarelli, A., Lubart, A., Kain, D., Amer, M., . . . Blinder, P. (2019). Prophylactic TLR9 stimulation reduces brain metastasis through microglia activation. PLOS Biology, 17(3), e2006859. doi: 10.1371/journal.pbio.2006859. https://doi.org/10.1371/journal.pbio.2006859

Bjørnstad, D. M., Åbjørsbråten, K. S., Hennestad, E., Cunen, C., Hermansen, G. H., Bojarskaite, L., . . . Enger, R. (2021). Begonia—A Two-Photon Imaging Analysis Pipeline for Astrocytic Ca2+ Signals. [Original Research]. Frontiers in cellular neuroscience, 15(176). doi: 10.3389/fncel.2021.681066. https://www.frontiersin.org/article/10.3389/fncel.2021.681066

Blot, A., Roth, M. M., Gasler, I., Javadzadeh, M., Imhof, F., & Hofer, S. B. (2021). Visual intracortical and transthalamic pathways carry distinct information to cortical areas. Neuron, 109(12), 1996-2008.e1996. doi: https://doi.org/10.1016/j.neuron.2021.04.017. https://www.sciencedirect.com/science/article/pii/S089662732100283X

Chakraborty, T., Chen, B., Daetwyler, S., Chang, B.-J., Vanderpoorten, O., Sapoznik, E., . . . Fiolka, R. (2020). Converting lateral scanning into axial focusing to speed up three-dimensional microscopy. Light: Science & Applications, 9(1), 165. doi: 10.1038/s41377-020-00401-9. https://doi.org/10.1038/s41377-020-00401-9

Chang, J. T., Whitney, D., & Fitzpatrick, D. (2020). Experience-Dependent Reorganization Drives Development of a Binocularly Unified Cortical Representation of Orientation. Neuron, 107(2), 338-350.e335. doi: https://doi.org/10.1016/j.neuron.2020.04.022. https://www.sciencedirect.com/science/article/pii/S0896627320303147

Chen, B., Chakraborty, T., Daetwyler, S., Manton, J. D., Dean, K., & Fiolka, R. (2020). Extended depth of focus multiphoton microscopy via incoherent pulse splitting. Biomedical Optics Express, 11(7), 3830-3842. doi: 10.1364/boe.393931. http://www.osapublishing.org/boe/abstract.cfm?URI=boe-11-7-3830

Chen, D., Ren, M., Zhang, D., Chen, J., Gu, S., & Chen, S.-C. (2020). Design of a multi-modality DMD-based two-photon microscope system. Optics Express, 28(20), 30187-30198. doi: 10.1364/oe.404652. http://www.opticsexpress.org/abstract.cfm?URI=oe-28-20-30187

Chen, X., Cheng, H., Deng, X., Tong, S., Li, J., Qiu, P., & Wang, K. (2021). Self-phase-modulated femtosecond laser source at 1603 nm and its application to deep-brain 3-photon microscopy in vivo. [https://doi.org/10.1002/jbio.202000349]. Journal of Biophotonics, 14(3), e202000349. doi: https://doi.org/10.1002/jbio.202000349. https://doi.org/10.1002/jbio.202000349

Cheng, H., Tong, S., Deng, X., Liu, H., Du, Y., He, C., . . . Wang, K. (2019). Deep-brain 2-photon fluorescence microscopy in vivo excited at the1700  nm window. Optics Letters, 44(17), 4432-4435. doi: 10.1364/ol.44.004432. http://ol.osa.org/abstract.cfm?URI=ol-44-17-4432

Cheung, J., Maire, P., Kim, J., Sy, J., & Hires, S. A. (2019). The Sensorimotor Basis of Whisker-Guided Anteroposterior Object Localization in Head-Fixed Mice. Current Biology, 29(18), 3029-3040.e3024. doi: https://doi.org/10.1016/j.cub.2019.07.068. https://www.sciencedirect.com/science/article/pii/S0960982219309480

Choi, J., Goncharov, V., Kleinbart, J., Orsborn, A., & Pesaran, B. (2018, 18-21 July 2018). Monkey-MIMMS: Towards Automated Cellular Resolution Large- Scale Two-Photon Microscopy In The Awake Macaque Monkey. Paper presented at the 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

Chong, E. Z., Panniello, M., Barreiros, I., Kohl, M. M., & Booth, M. J. (2019). Quasi-simultaneous multiplane calcium imaging of neuronal circuits. Biomedical Optics Express, 10(1), 267-282. doi: 10.1364/boe.10.000267. http://www.osapublishing.org/boe/abstract.cfm?URI=boe-10-1-267

Clemens, J., Ozeri-Engelhard, N., & Murthy, M. (2018). Fast intensity adaptation enhances the encoding of sound in Drosophila. Nature Communications, 9(1), 134. doi: 10.1038/s41467-017-02453-9. https://doi.org/10.1038/s41467-017-02453-9

Collot, M., Wilms, C. D., Bentkhayet, A., Marcaggi, P., Couchman, K., Charpak, S., . . . Mallet, J.-M. (2015). CaRuby-Nano: a novel high affinity calcium probe for dual color imaging. eLife, 4, e05808. doi: 10.7554/eLife.05808. https://doi.org/10.7554/eLife.05808

Costa Moura, C., Lanham, S. A., Monfort, T., Bourdakos, K. N., Tare, R. S., Oreffo, R. O. C., & Mahajan, S. (2018). Quantitative temporal interrogation in 3D of bioengineered human cartilage using multimodal label-free imaging. Integrative Biology, 10(10), 635-645. doi: 10.1039/c8ib00050f. https://doi.org/10.1039/c8ib00050f

Dag, U., Lei, Z., Le, J. Q., Wong, A., Bushey, D., & Keleman, K. (2019). Neuronal reactivation during post-learning sleep consolidates long-term memory in Drosophila. eLife, 8, e42786. doi: 10.7554/eLife.42786. https://doi.org/10.7554/eLife.42786

Dana, H., Sun, Y., Mohar, B., Hulse, B. K., Kerlin, A. M., Hasseman, J. P., . . . Kim, D. S. (2019). High-performance calcium sensors for imaging activity in neuronal populations and microcompartments. Nature Methods, 16(7), 649-657. doi: 10.1038/s41592-019-0435-6. https://doi.org/10.1038/s41592-019-0435-6

de Boer, W. D. A. M., Hirtz, J. J., Capretti, A., Gregorkiewicz, T., Izquierdo-Serra, M., Han, S., . . . Yuste, R. (2018). Neuronal photoactivation through second-harmonic near-infrared absorption by gold nanoparticles. Light: Science & Applications, 7(1), 100. doi: 10.1038/s41377-018-0103-0. https://doi.org/10.1038/s41377-018-0103-0

de Malmazet, D., Kühn, N. K., & Farrow, K. (2018). Retinotopic Separation of Nasal and Temporal Motion Selectivity in the Mouse Superior Colliculus. Current Biology, 28(18), 2961-2969.e2964. doi: https://doi.org/10.1016/j.cub.2018.07.001. https://www.sciencedirect.com/science/article/pii/S096098221830900X

Deverett, B., Koay, S. A., Oostland, M., & Wang, S. S. H. (2018). Cerebellar involvement in an evidence-accumulation decision-making task. eLife, 7, e36781. doi: 10.7554/eLife.36781. https://doi.org/10.7554/eLife.36781

Diana, G., Sainsbury, T. T. J., & Meyer, M. P. (2019). Bayesian inference of neuronal assemblies. PLOS Computational Biology, 15(10), e1007481. doi: 10.1371/journal.pcbi.1007481. https://doi.org/10.1371/journal.pcbi.1007481

Donzis, E. J., Estrada-Sánchez, A. M., Indersmitten, T., Oikonomou, K., Tran, C. H., Wang, C., . . . Levine, M. S. (2020). Cortical Network Dynamics Is Altered in Mouse Models of Huntington’s Disease. Cerebral Cortex, 30(4), 2372-2388. doi: 10.1093/cercor/bhz245. https://doi.org/10.1093/cercor/bhz245

Driscoll, L. N., Pettit, N. L., Minderer, M., Chettih, S. N., & Harvey, C. D. (2017). Dynamic Reorganization of Neuronal Activity Patterns in Parietal Cortex. Cell, 170(5), 986-999.e916. doi: https://doi.org/10.1016/j.cell.2017.07.021. https://www.sciencedirect.com/science/article/pii/S0092867417308280

Dürst, C. D., Wiegert, J. S., Helassa, N., Kerruth, S., Coates, C., Schulze, C., . . . Oertner, T. G. (2019). High-speed imaging of glutamate release with genetically encoded sensors. Nature Protocols, 14(5), 1401-1424. doi: 10.1038/s41596-019-0143-9. https://doi.org/10.1038/s41596-019-0143-9

El-Boustani, S., Sermet, B. S., Foustoukos, G., Oram, T. B., Yizhar, O., & Petersen, C. C. H. (2020). Anatomically and functionally distinct thalamocortical inputs to primary and secondary mouse whisker somatosensory cortices. Nature Communications, 11(1), 3342. doi: 10.1038/s41467-020-17087-7. https://doi.org/10.1038/s41467-020-17087-7

Engelhard, B., Finkelstein, J., Cox, J., Fleming, W., Jang, H. J., Ornelas, S., . . . Witten, I. B. (2019). Specialized coding of sensory, motor and cognitive variables in VTA dopamine neurons. Nature, 570(7762), 509-513. doi: 10.1038/s41586-019-1261-9. https://doi.org/10.1038/s41586-019-1261-9

Esmaeili, V., Tamura, K., Muscinelli, S. P., Modirshanechi, A., Boscaglia, M., Lee, A. B., . . . Petersen, C. C. H. (2021). Rapid suppression and sustained activation of distinct cortical regions for a delayed sensory-triggered motor response. Neuron, 109(13), 2183-2201.e2189. doi: https://doi.org/10.1016/j.neuron.2021.05.005. https://www.sciencedirect.com/science/article/pii/S0896627321003317

Euler, T., Franke, K., & Baden, T. (2019). Studying a Light Sensor with Light: Multiphoton Imaging in the Retina. In E. Hartveit (Ed.), Multiphoton Microscopy (pp. 225-250). New York, NY: Springer New York.

Fast, A., Lal, A., Durkin, A. F., Lentsch, G., Harris, R. M., Zachary, C. B., . . . Balu, M. (2020). Fast, large area multiphoton exoscope (FLAME) for macroscopic imaging with microscopic resolution of human skin. Scientific Reports, 10(1), 18093. doi: 10.1038/s41598-020-75172-9. https://doi.org/10.1038/s41598-020-75172-9

Fast, A., Lal, A., Durkin, A. F., Zachary, C. B., Ganesan, A. K., & Balu, M. (2020). FLAME: Macroscopic imaging with microscopic resolution. Optical biopsy of human skin. bioRxiv, 2020.2001.2031.927590. doi: 10.1101/2020.01.31.927590. http://biorxiv.org/content/early/2020/02/02/2020.01.31.927590.abstract

Feese, B. D., Pafundo, D. E., Schmehl, M. N., & Kuhlman, S. J. (2017). Binocular deprivation induces both age-dependent and age-independent forms of plasticity in parvalbumin inhibitory neuron visual response properties. Journal of Neurophysiology, 119(2), 738-751. doi: 10.1152/jn.00386.2017. https://doi.org/10.1152/jn.00386.2017

Fleming, W., Jewell, S., Engelhard, B., Witten, D. M., & Witten, I. B. (2021). Inferring spikes from calcium imaging in dopamine neurons. PLOS ONE, 16(6), e0252345. doi: 10.1371/journal.pone.0252345. https://doi.org/10.1371/journal.pone.0252345

Gaffield, M. A., Amat, S. B., Bito, H., & Christie, J. M. (2016). Chronic imaging of movement-related Purkinje cell calcium activity in awake behaving mice. Journal of Neurophysiology, 115(1), 413-422. doi: 10.1152/jn.00834.2015. https://journals.physiology.org/doi/abs/10.1152/jn.00834.2015

Gaffield, M. A., Bonnan, A., & Christie, J. M. (2019). Conversion of Graded Presynaptic Climbing Fiber Activity into Graded Postsynaptic Ca2+ Signals by Purkinje Cell Dendrites. Neuron, 102(4), 762-769.e764. doi: https://doi.org/10.1016/j.neuron.2019.03.010. https://www.sciencedirect.com/science/article/pii/S089662731930217X

Gaffield, M. A., & Christie, J. M. (2017). Movement Rate Is Encoded and Influenced by Widespread, Coherent Activity of Cerebellar Molecular Layer Interneurons. The Journal of Neuroscience, 37(18), 4751. doi: 10.1523/jneurosci.0534-17.2017. http://www.jneurosci.org/content/37/18/4751.abstract

Gaffield, M. A., Rowan, M. J. M., Amat, S. B., Hirai, H., & Christie, J. M. (2018). Inhibition gates supralinear Ca2+ signaling in Purkinje cell dendrites during practiced movements. eLife, 7, e36246. doi: 10.7554/eLife.36246. https://doi.org/10.7554/eLife.36246

Gala, R., Lebrecht, D., Sahlender, D. A., Jorstad, A., Knott, G., Holtmaat, A., & Stepanyants, A. (2017). Computer assisted detection of axonal bouton structural plasticity in in vivo time-lapse images. eLife, 6, e29315. doi: 10.7554/eLife.29315. https://doi.org/10.7554/eLife.29315

Gan, M., He, C., Liu, H., Zhuang, Z., Qiu, P., & Wang, K. (2019). Air-core fiber or photonic-crystal rod, which is more suitable for energetic femtosecond pulse generation and three-photon microscopy at the 1700-nm window? [https://doi.org/10.1002/jbio.201900069]. Journal of Biophotonics, 12(10), e201900069. doi: https://doi.org/10.1002/jbio.201900069. https://doi.org/10.1002/jbio.201900069

Gauthier, J. L., & Tank, D. W. (2018). A Dedicated Population for Reward Coding in the Hippocampus. Neuron, 99(1), 179-193.e177. doi: https://doi.org/10.1016/j.neuron.2018.06.008. https://www.sciencedirect.com/science/article/pii/S0896627318304768

Godenzini, L., Alwis, D., Guzulaitis, R., Honnuraiah, S., Stuart, G. J., & Palmer, L. M. (2021). Auditory input enhances somatosensory encoding and tactile goal-directed behavior. Nature Communications, 12(1), 4509. doi: 10.1038/s41467-021-24754-w. https://doi.org/10.1038/s41467-021-24754-w

Groschner, L. N., Chan Wah Hak, L., Bogacz, R., DasGupta, S., & Miesenböck, G. (2018). Dendritic Integration of Sensory Evidence in Perceptual Decision-Making. Cell, 173(4), 894-905.e813. doi: https://doi.org/10.1016/j.cell.2018.03.075. https://www.sciencedirect.com/science/article/pii/S0092867418304471

Gu, Y., Lewallen, S., Kinkhabwala, A. A., Domnisoru, C., Yoon, K., Gauthier, J. L., . . . Tank, D. W. (2018). A Map-like Micro-Organization of Grid Cells in the Medial Entorhinal Cortex. Cell, 175(3), 736-750.e730. doi: https://doi.org/10.1016/j.cell.2018.08.066. https://www.sciencedirect.com/science/article/pii/S009286741831167X

Hall, C. E., McNamara, J. O., & Yasuda, R. (2019). Analysis of TrkB Receptor Activity Using FRET Sensors. In C. B. Duarte & E. Tongiorgi (Eds.), Brain-Derived Neurotrophic Factor (BDNF) (pp. 149-157). New York, NY: Springer New York.

Hamodi, A. S., Martinez Sabino, A., Fitzgerald, N. D., Moschou, D., & Crair, M. C. (2020). Transverse sinus injections drive robust whole-brain expression of transgenes. eLife, 9, e53639. doi: 10.7554/eLife.53639. https://doi.org/10.7554/eLife.53639

Hamodi, A. S., Sabino, A. M., Fitzgerald, N. D., & Crair, M. C. (2019). Transverse sinus injections: A novel method for whole-brain vector-driven gene delivery. bioRxiv, 579730. doi: 10.1101/579730. http://biorxiv.org/content/early/2019/03/16/579730.abstract

Har-Gil, H., Golgher, L., Israel, S., Kain, D., Cheshnovsky, O., Parnas, M., & Blinder, P. (2018). PySight: plug and play photon counting for fast continuous volumetric intravital microscopy. Optica, 5(9), 1104-1112. doi: 10.1364/optica.5.001104. http://www.osapublishing.org/optica/abstract.cfm?URI=optica-5-9-1104

Hattori, R., Danskin, B., Babic, Z., Mlynaryk, N., & Komiyama, T. (2019). Area-Specificity and Plasticity of History-Dependent Value Coding During Learning. Cell, 177(7), 1858-1872.e1815. doi: https://doi.org/10.1016/j.cell.2019.04.027. https://www.sciencedirect.com/science/article/pii/S0092867419304465

He, C., Deng, X., Pan, Y., Tong, S., Kang, J., Li, J., . . . Wang, K. (2020). 3-photon microscopy of myelin in mouse digital skin excited at the 1700-nm window. [https://doi.org/10.1002/jbio.202000321]. Journal of Biophotonics, 13(12), e202000321. doi: https://doi.org/10.1002/jbio.202000321. https://doi.org/10.1002/jbio.202000321

He, C., Gan, M., Deng, X., Liu, H., Qiu, P., & Wang, K. (2019). 3-photon fluorescence imaging of sulforhodamine B-labeled elastic fibers in the mouse skin in vivo. [https://doi.org/10.1002/jbio.201900185]. Journal of Biophotonics, 12(11), e201900185. doi: https://doi.org/10.1002/jbio.201900185. https://doi.org/10.1002/jbio.201900185

He, J., Du, Y., Zhuang, Z., Wen, W., Liu, H., Wang, K., & Qiu, P. (2018). Wavelength Separation Tunable 2-Color Soliton Generation and Its Application to 2-Color Fluorescence Multiphoton Microscopy. Journal of Lightwave Technology, 36(16), 3249-3253. doi: 10.1109/jlt.2018.2833280. 

Henschke, J. U., Dylda, E., Katsanevaki, D., Dupuy, N., Currie, S. P., Amvrosiadis, T., . . . Rochefort, N. L. (2020). Reward Association Enhances Stimulus-Specific Representations in Primary Visual Cortex. Current Biology, 30(10), 1866-1880.e1865. doi: https://doi.org/10.1016/j.cub.2020.03.018. https://www.sciencedirect.com/science/article/pii/S0960982220303560

Henschke, J. U., Price, A. T., & Pakan, J. M. P. (2021). Enhanced modulation of cell-type specific neuronal responses in mouse dorsal auditory field during locomotion. Cell Calcium, 96, 102390. doi: https://doi.org/10.1016/j.ceca.2021.102390. https://www.sciencedirect.com/science/article/pii/S0143416021000440

Herdzik, K. P., Bourdakos, K. N., Johnson, P. B., Lister, A. P., Pitera, A. P., Guo, C.-y., . . . Mahajan, S. (2020). Multimodal spectral focusing CARS and SFG microscopy with a tailored coherent continuum from a microstructured fiber. Applied Physics B, 126(5), 84. doi: 10.1007/s00340-020-7406-6. https://doi.org/10.1007/s00340-020-7406-6

Hige, T., Aso, Y., Modi, Mehrab N., Rubin, Gerald M., & Turner, Glenn C. (2015). Heterosynaptic Plasticity Underlies Aversive Olfactory Learning in Drosophila. Neuron, 88(5), 985-998. doi: https://doi.org/10.1016/j.neuron.2015.11.003. https://www.sciencedirect.com/science/article/pii/S0896627315009824

Inoue, M., Takeuchi, A., Manita, S., Horigane, S.-i., Sakamoto, M., Kawakami, R., . . . Bito, H. (2019). Rational Engineering of XCaMPs, a Multicolor GECI Suite for In Vivo Imaging of Complex Brain Circuit Dynamics. Cell, 177(5), 1346-1360.e1324. doi: https://doi.org/10.1016/j.cell.2019.04.007. https://www.sciencedirect.com/science/article/pii/S0092867419303939

Jackman, S. L., Chen, C. H., Chettih, S. N., Neufeld, S. Q., Drew, I. R., Agba, C. K., . . . Regehr, W. G. (2018). Silk Fibroin Films Facilitate Single-Step Targeted Expression of Optogenetic Proteins. Cell Reports, 22(12), 3351-3361. doi: https://doi.org/10.1016/j.celrep.2018.02.081. https://www.sciencedirect.com/science/article/pii/S2211124718302912

Jeanne, J. M., Fişek, M., & Wilson, R. I. (2018). The Organization of Projections from Olfactory Glomeruli onto Higher-Order Neurons. Neuron, 98(6), 1198-1213.e1196. doi: https://doi.org/10.1016/j.neuron.2018.05.011. https://www.sciencedirect.com/science/article/pii/S0896627318303830

Kafashan, M., Jaffe, A. W., Chettih, S. N., Nogueira, R., Arandia-Romero, I., Harvey, C. D., . . . Drugowitsch, J. (2021). Scaling of sensory information in large neural populations shows signatures of information-limiting correlations. Nature Communications, 12(1), 473. doi: 10.1038/s41467-020-20722-y. https://doi.org/10.1038/s41467-020-20722-y

Katlowitz, K. A., Picardo, M. A., & Long, M. A. (2018). Stable Sequential Activity Underlying the Maintenance of a Precisely Executed Skilled Behavior. Neuron, 98(6), 1133-1140.e1133. doi: https://doi.org/10.1016/j.neuron.2018.05.017. https://www.sciencedirect.com/science/article/pii/S089662731830415X

Kato, H. K., Asinof, S. K., & Isaacson, J. S. (2017). Network-Level Control of Frequency Tuning in Auditory Cortex. Neuron, 95(2), 412-423.e414. doi: https://doi.org/10.1016/j.neuron.2017.06.019. https://www.sciencedirect.com/science/article/pii/S0896627317305172

Kato, Hiroyuki K., Gillet, Shea N., & Isaacson, Jeffry S. (2015). Flexible Sensory Representations in Auditory Cortex Driven by Behavioral Relevance. Neuron, 88(5), 1027-1039. doi: https://doi.org/10.1016/j.neuron.2015.10.024. https://www.sciencedirect.com/science/article/pii/S0896627315009186

Kerlin, A., Mohar, B., Flickinger, D., MacLennan, B. J., Dean, M. B., Davis, C., . . . Svoboda, K. (2019). Functional clustering of dendritic activity during decision-making. eLife, 8, e46966. doi: 10.7554/eLife.46966. https://doi.org/10.7554/eLife.46966

Kim, H., Homann, J., Tank, D. W., & Berry, M. J. (2019). A Long Timescale Stimulus History Effect in the Primary Visual Cortex. bioRxiv, 585539. doi: 10.1101/585539. http://biorxiv.org/content/early/2019/03/21/585539.abstract

Kim, M.-H., Znamenskiy, P., Iacaruso, M. F., & Mrsic-Flogel, T. D. (2018). Segregated Subnetworks of Intracortical Projection Neurons in Primary Visual Cortex. Neuron, 100(6), 1313-1321.e1316. doi: https://doi.org/10.1016/j.neuron.2018.10.023. https://www.sciencedirect.com/science/article/pii/S0896627318309115

Kinkhabwala, A. A., Gu, Y., Aronov, D., & Tank, D. W. (2020). Visual cue-related activity of cells in the medial entorhinal cortex during navigation in virtual reality. eLife, 9, e43140. doi: 10.7554/eLife.43140. https://doi.org/10.7554/eLife.43140

Klapoetke, N. C., Nern, A., Peek, M. Y., Rogers, E. M., Breads, P., Rubin, G. M., . . . Card, G. M. (2017). Ultra-selective looming detection from radial motion opponency. Nature, 551(7679), 237-241. doi: 10.1038/nature24626. https://doi.org/10.1038/nature24626

Knoblich, U., Huang, L., Zeng, H., & Li, L. (2019). Neuronal cell-subtype specificity of neural synchronization in mouse primary visual cortex. Nature Communications, 10(1), 2533. doi: 10.1038/s41467-019-10498-1. https://doi.org/10.1038/s41467-019-10498-1

Lee, K.-S., Huang, X., & Fitzpatrick, D. (2016). Topology of ON and OFF inputs in visual cortex enables an invariant columnar architecture. Nature, 533(7601), 90-94. doi: 10.1038/nature17941. https://doi.org/10.1038/nature17941

LeMessurier, A. M., Laboy-Juárez, K. J., McClain, K., Chen, S., Nguyen, T., & Feldman, D. E. (2019). Enrichment drives emergence of functional columns and improves sensory coding in the whisker map in L2/3 of mouse S1. eLife, 8, e46321. doi: 10.7554/eLife.46321. https://doi.org/10.7554/eLife.46321

Lerman, G. M., Little, J. P., Gill, J. V., Rinberg, D., & Shoham, S. (2019). Real-Time In Situ Holographic Optogenetics Confocally Unraveled Sculpting Microscopy. [https://doi.org/10.1002/lpor.201900144]. Laser & Photonics Reviews, 13(9), 1900144. doi: https://doi.org/10.1002/lpor.201900144. https://doi.org/10.1002/lpor.201900144

Light, S. E. W., & Jontes, J. D. (2019). Multiplane Calcium Imaging Reveals Disrupted Development of Network Topology in Zebrafish pcdh19 Mutants. eNeuro, 6(3), ENEURO.0420-0418.2019. doi: 10.1523/eneuro.0420-18.2019. https://pubmed.ncbi.nlm.nih.gov/31061071

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6525332/

Lin, Q., Manley, J., Helmreich, M., Schlumm, F., Li, J. M., Robson, D. N., . . . Vaziri, A. (2020). Cerebellar Neurodynamics Predict Decision Timing and Outcome on the Single-Trial Level. Cell, 180(3), 536-551.e517. doi: https://doi.org/10.1016/j.cell.2019.12.018. https://www.sciencedirect.com/science/article/pii/S0092867419313807

Liu, H., Du, Y., Peng, X., Zhou, X., Qiu, P., & Wang, K. (2017). Sealing of Immersion Deuterium Dioxide and Its Application to Signal Maintenance for Ex-Vivo and In-Vivo Multiphoton Microscopy Excited at the 1700-nm Window. IEEE Photonics Journal, 9(5), 1-8. doi: 10.1109/jphot.2017.2737012. 

Liu, H., Zhuang, Z., He, J., Tong, S., He, C., Deng, X., . . . Wang, K. (2019). High-energy polarized soliton synthesis and its application to deep-brain 3-photon microscopy in vivo. Optics Express, 27(11), 15309-15317. doi: 10.1364/oe.27.015309. http://www.opticsexpress.org/abstract.cfm?URI=oe-27-11-15309

Liu, R., Ball, N., Brockill, J., Kuan, L., Millman, D., White, C., . . . Saggau, P. (2018). Multi-plane Imaging of Neural Activity From the Mammalian Brain Using a Fast-switching Liquid Crystal Spatial Light Modulator. bioRxiv, 506618. doi: 10.1101/506618. http://biorxiv.org/content/early/2018/12/30/506618.abstract

Long, B., Li, L., Knoblich, U., Zeng, H., & Peng, H. (2015). 3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in vivo. Scientific Reports, 5(1), 18426. doi: 10.1038/srep18426. https://doi.org/10.1038/srep18426

Lur, G., Vinck, Martin A., Tang, L., Cardin, Jessica A., & Higley, Michael J. (2016). Projection-Specific Visual Feature Encoding by Layer 5 Cortical Subnetworks. Cell Reports, 14(11), 2538-2545. doi: https://doi.org/10.1016/j.celrep.2016.02.050. https://www.sciencedirect.com/science/article/pii/S2211124716301711

Ma, L., Jongbloets, B. C., Xiong, W.-H., Melander, J. B., Qin, M., Lameyer, T. J., . . . Zhong, H. (2018). A Highly Sensitive A-Kinase Activity Reporter for Imaging Neuromodulatory Events in Awake Mice. Neuron, 99(4), 665-679.e665. doi: https://doi.org/10.1016/j.neuron.2018.07.020. https://www.sciencedirect.com/science/article/pii/S0896627318305944

Makino, H., Ren, C., Liu, H., Kim, A. N., Kondapaneni, N., Liu, X., . . . Komiyama, T. (2017). Transformation of Cortex-wide Emergent Properties during Motor Learning. Neuron, 94(4), 880-890.e888. doi: https://doi.org/10.1016/j.neuron.2017.04.015. https://www.sciencedirect.com/science/article/pii/S0896627317303410

Maltese, M., March, J. R., Bashaw, A. G., & Tritsch, N. X. (2019). Dopamine modulates the size of striatal projection neuron ensembles. bioRxiv, 865006. doi: 10.1101/865006. http://biorxiv.org/content/early/2019/12/05/865006.abstract

Maltese, M., March, J. R., Bashaw, A. G., & Tritsch, N. X. (2021). Dopamine differentially modulates the size of projection neuron ensembles in the intact and dopamine-depleted striatum. eLife, 10, e68041. doi: 10.7554/eLife.68041. https://doi.org/10.7554/eLife.68041

Mamiya, A., Gurung, P., & Tuthill, J. C. (2018). Neural Coding of Leg Proprioception in Drosophila. Neuron, 100(3), 636-650.e636. doi: https://doi.org/10.1016/j.neuron.2018.09.009. https://www.sciencedirect.com/science/article/pii/S0896627318307827

Marques, T., Summers, M. T., Fioreze, G., Fridman, M., Dias, R. F., Feller, M. B., & Petreanu, L. (2018). A Role for Mouse Primary Visual Cortex in Motion Perception. Current Biology, 28(11), 1703-1713.e1706. doi: https://doi.org/10.1016/j.cub.2018.04.012. https://www.sciencedirect.com/science/article/pii/S0960982218304408

Mateo, C., Knutsen, P. M., Tsai, P. S., Shih, A. Y., & Kleinfeld, D. (2017). Entrainment of Arteriole Vasomotor Fluctuations by Neural Activity Is a Basis of Blood-Oxygenation-Level-Dependent “Resting-State” Connectivity. Neuron, 96(4), 936-948.e933. doi: https://doi.org/10.1016/j.neuron.2017.10.012. https://www.sciencedirect.com/science/article/pii/S0896627317309807

Mayrhofer, J. M., El-Boustani, S., Foustoukos, G., Auffret, M., Tamura, K., & Petersen, C. C. H. (2019). Distinct Contributions of Whisker Sensory Cortex and Tongue-Jaw Motor Cortex in a Goal-Directed Sensorimotor Transformation. Neuron, 103(6), 1034-1043.e1035. doi: https://doi.org/10.1016/j.neuron.2019.07.008. https://www.sciencedirect.com/science/article/pii/S0896627319306348

Meier, M., & Borst, A. (2019). Extreme Compartmentalization in a Drosophila Amacrine Cell. Current Biology, 29(9), 1545-1550.e1542. doi: https://doi.org/10.1016/j.cub.2019.03.070. https://www.sciencedirect.com/science/article/pii/S0960982219303987

Meshulam, L., Gauthier, J. L., Brody, C. D., Tank, D. W., & Bialek, W. (2017). Collective Behavior of Place and Non-place Neurons in the Hippocampal Network. Neuron, 96(5), 1178-1191.e1174. doi: https://doi.org/10.1016/j.neuron.2017.10.027. https://www.sciencedirect.com/science/article/pii/S0896627317309960

Mikael, T. E., David, R., Nancy, H.-D., Marco, W., Christoph, H., Rainer, A. L., . . . Marco, A. (2020). Surgical microscope with integrated fluorescence lifetime imaging for 5-aminolevulinic acid fluorescence-guided neurosurgery. Journal of Biomedical Optics, 25(7), 1-7. doi: 10.1117/1.jbo.25.7.071202. https://doi.org/10.1117/1.JBO.25.7.071202

Minamisawa, G., Kwon, S. E., Chevée, M., Brown, S. P., & O’Connor, D. H. (2018). A Non-canonical Feedback Circuit for Rapid Interactions between Somatosensory Cortices. Cell Reports, 23(9), 2718-2731.e2716. doi: https://doi.org/10.1016/j.celrep.2018.04.115. https://www.sciencedirect.com/science/article/pii/S2211124718307150

Minderer, M., Brown, K. D., & Harvey, C. D. (2019). The Spatial Structure of Neural Encoding in Mouse Posterior Cortex during Navigation. Neuron, 102(1), 232-248.e211. doi: https://doi.org/10.1016/j.neuron.2019.01.029. https://www.sciencedirect.com/science/article/pii/S089662731930056X

Mishra, A., Salari, A., Berigan, B. R., Miguel, K. C., Amirshenava, M., Robinson, A., . . . Zars, T. (2018). The Drosophila Gr28bD product is a non-specific cation channel that can be used as a novel thermogenetic tool. Scientific Reports, 8(1), 901. doi: 10.1038/s41598-017-19065-4. https://doi.org/10.1038/s41598-017-19065-4

Mitani, A., Dong, M., & Komiyama, T. (2018). Brain-Computer Interface with Inhibitory Neurons Reveals Subtype-Specific Strategies. Current Biology, 28(1), 77-83.e74. doi: https://doi.org/10.1016/j.cub.2017.11.035. https://www.sciencedirect.com/science/article/pii/S0960982217315178

Mitani, A., & Komiyama, T. (2018). Real-Time Processing of Two-Photon Calcium Imaging Data Including Lateral Motion Artifact Correction. [Methods]. Frontiers in Neuroinformatics, 12(98). doi: 10.3389/fninf.2018.00098. https://www.frontiersin.org/article/10.3389/fninf.2018.00098

Moore, A. K., Weible, A. P., Balmer, T. S., Trussell, L. O., & Wehr, M. (2018). Rapid Rebalancing of Excitation and Inhibition by Cortical Circuitry. Neuron, 97(6), 1341-1355.e1346. doi: https://doi.org/10.1016/j.neuron.2018.01.045. https://www.sciencedirect.com/science/article/pii/S0896627318300709

Morcos, A. S., & Harvey, C. D. (2016). History-dependent variability in population dynamics during evidence accumulation in cortex. Nature Neuroscience, 19(12), 1672-1681. doi: 10.1038/nn.4403. https://doi.org/10.1038/nn.4403

Moura, C. C., Bourdakos, K. N., Tare, R. S., Oreffo, R. O. C., & Mahajan, S. (2019). Live-imaging of Bioengineered Cartilage Tissue using Multimodal Non-linear Molecular Imaging. Scientific Reports, 9(1), 5561. doi: 10.1038/s41598-019-41466-w. https://doi.org/10.1038/s41598-019-41466-w

Murphy-Royal, C., Johnston, A. D., Boyce, A. K. J., Diaz-Castro, B., Institoris, A., Peringod, G., . . . Gordon, G. R. (2020). Stress gates an astrocytic energy reservoir to impair synaptic plasticity. Nature Communications, 11(1), 2014. doi: 10.1038/s41467-020-15778-9. https://doi.org/10.1038/s41467-020-15778-9

Oda, K., Vierock, J., Oishi, S., Rodriguez-Rozada, S., Taniguchi, R., Yamashita, K., . . . Nureki, O. (2018). Crystal structure of the red light-activated channelrhodopsin Chrimson. Nature Communications, 9(1), 3949. doi: 10.1038/s41467-018-06421-9. https://doi.org/10.1038/s41467-018-06421-9

Oppermann, J., Fischer, P., Silapetere, A., Liepe, B., Rodriguez-Rozada, S., Flores-Uribe, J., . . . Wietek, J. (2019). MerMAIDs: a family of metagenomically discovered marine anion-conducting and intensely desensitizing channelrhodopsins. Nature Communications, 10(1), 3315. doi: 10.1038/s41467-019-11322-6. https://doi.org/10.1038/s41467-019-11322-6

Orlova, N., Tsyboulski, D., Najafi, F., Seid, S., Kivikas, S., Kato, I., . . . Saggau, P. (2020). Multiplane Mesoscope reveals distinct cortical interactions following expectation violations. bioRxiv, 2020.2010.2006.328294. doi: 10.1101/2020.10.06.328294. http://biorxiv.org/content/early/2020/10/10/2020.10.06.328294.abstract

Parker, J. G., Marshall, J. D., Ahanonu, B., Wu, Y.-W., Kim, T. H., Grewe, B. F., . . . Schnitzer, M. J. (2018). Diametric neural ensemble dynamics in parkinsonian and dyskinetic states. Nature, 557(7704), 177-182. doi: 10.1038/s41586-018-0090-6. https://doi.org/10.1038/s41586-018-0090-6

Pearre, B. W., Michas, C., Tsang, J.-M., Gardner, T. J., & Otchy, T. M. (2019). Fast micron-scale 3D printing with a resonant-scanning two-photon microscope. Additive Manufacturing, 30, 100887. doi: https://doi.org/10.1016/j.addma.2019.100887. https://www.sciencedirect.com/science/article/pii/S2214860418303944

Peron, S., Pancholi, R., Voelcker, B., Wittenbach, J. D., Ólafsdóttir, H. F., Freeman, J., & Svoboda, K. (2020). Recurrent interactions in local cortical circuits. Nature, 579(7798), 256-259. doi: 10.1038/s41586-020-2062-x. https://doi.org/10.1038/s41586-020-2062-x

Pichler, P., & Lagnado, L. (2019). The Transfer Characteristics of Hair Cells Encoding Mechanical Stimuli in the Lateral Line of Zebrafish. The Journal of Neuroscience, 39(1), 112. doi: 10.1523/jneurosci.1472-18.2018. http://www.jneurosci.org/content/39/1/112.abstract

Pisanello, M., Pisano, F., Hyun, M., Maglie, E., Balena, A., De Vittorio, M., . . . Pisanello, F. (2019). The Three-Dimensional Signal Collection Field for Fiber Photometry in Brain Tissue. [Original Research]. Frontiers in Neuroscience, 13(82). doi: 10.3389/fnins.2019.00082. https://www.frontiersin.org/article/10.3389/fnins.2019.00082

Pisano, F., Pisanello, M., Maglie, E., Balena, A., Sileo, L., Spagnolo, B., . . . Pisanello, F. (2018). Multipoint and large volume fiber photometry with a single tapered optical fiber implant. bioRxiv, 455766. doi: 10.1101/455766. http://biorxiv.org/content/early/2018/10/29/455766.abstract

Podgorski, K., & Ranganathan, G. (2016). Brain heating induced by near-infrared lasers during multiphoton microscopy. Journal of Neurophysiology, 116(3), 1012-1023. doi: 10.1152/jn.00275.2016. https://doi.org/10.1152/jn.00275.2016

Poleg-Polsky, A., Ding, H., & Diamond, J. S. (2018). Functional Compartmentalization within Starburst Amacrine Cell Dendrites in the Retina. Cell Reports, 22(11), 2898-2908. doi: https://doi.org/10.1016/j.celrep.2018.02.064. https://www.sciencedirect.com/science/article/pii/S2211124718302584

Pottackal, J., Singer, J. H., & Demb, J. B. (2020). Receptoral Mechanisms for Fast Cholinergic Transmission in Direction-Selective Retinal Circuitry. Frontiers in cellular neuroscience, 14, 604163-604163. doi: 10.3389/fncel.2020.604163. https://pubmed.ncbi.nlm.nih.gov/33324168

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7726240/

Pujala, A., & Koyama, M. (2019). Chronology-based architecture of descending circuits that underlie the development of locomotor repertoire after birth. eLife, 8, e42135. doi: 10.7554/eLife.42135. https://doi.org/10.7554/eLife.42135

Ramachandra, V., Pawlak, V., Wallace, D. J., & Kerr, J. N. D. (2020). Impact of visual callosal pathway is dependent upon ipsilateral thalamus. Nature Communications, 11(1), 1889. doi: 10.1038/s41467-020-15672-4. https://doi.org/10.1038/s41467-020-15672-4

Reinhard, K., Li, C., Do, Q., Burke, E. G., Heynderickx, S., & Farrow, K. (2019). A projection specific logic to sampling visual inputs in mouse superior colliculus. eLife, 8, e50697. doi: 10.7554/eLife.50697. https://doi.org/10.7554/eLife.50697

Ruiz-Uribe, N. E., Ahn, S. J., & Schaffer, C. B. (2019, 2019/04/14). Label Free Imaging of Cortical Blood Vessels Using Third Harmonic Generation (THG) Microscopy. Paper presented at the Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP), Tucson, Arizona.

Samonds, J. M., Feese, B. D., Lee, T. S., & Kuhlman, S. J. (2017). Nonuniform surround suppression of visual responses in mouse V1. Journal of Neurophysiology, 118(6), 3282-3292. doi: 10.1152/jn.00172.2017. https://doi.org/10.1152/jn.00172.2017

Schiavo, J. K., Valtcheva, S., Bair-Marshall, C., Song, S. C., Martin, K. A., & Froemke, R. C. (2020). Innate sensitivity and plastic mechanisms in auditory cortex for reliable maternal behavior. bioRxiv, 2020.2003.2011.987941. doi: 10.1101/2020.03.11.987941. http://biorxiv.org/content/early/2020/03/12/2020.03.11.987941.abstract

Schiavo, J. K., Valtcheva, S., Bair-Marshall, C. J., Song, S. C., Martin, K. A., & Froemke, R. C. (2020). Innate and plastic mechanisms for maternal behaviour in auditory cortex. Nature, 587(7834), 426-431. doi: 10.1038/s41586-020-2807-6. https://pubmed.ncbi.nlm.nih.gov/33029014

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7677212/

Scholl, B., Thomas, C. I., Ryan, M. A., Kamasawa, N., & Fitzpatrick, D. (2021). Cortical response selectivity derives from strength in numbers of synapses. Nature, 590(7844), 111-114. doi: 10.1038/s41586-020-03044-3. https://doi.org/10.1038/s41586-020-03044-3

Scholl, B., Wilson, D. E., & Fitzpatrick, D. (2017). Local Order within Global Disorder: Synaptic Architecture of Visual Space. Neuron, 96(5), 1127-1138.e1124. doi: https://doi.org/10.1016/j.neuron.2017.10.017. https://www.sciencedirect.com/science/article/pii/S0896627317309856

Scholl, B., Wilson, D. E., Jaepel, J., & Fitzpatrick, D. (2019). Functional Logic of Layer 2/3 Inhibitory Connectivity in the Ferret Visual Cortex. Neuron, 104(3), 451-457.e453. doi: https://doi.org/10.1016/j.neuron.2019.08.004. https://www.sciencedirect.com/science/article/pii/S0896627319306889

Scott, B. B., Constantinople, C. M., Akrami, A., Hanks, T. D., Brody, C. D., & Tank, D. W. (2017). Fronto-parietal Cortical Circuits Encode Accumulated Evidence with a Diversity of Timescales. Neuron, 95(2), 385-398.e385. doi: https://doi.org/10.1016/j.neuron.2017.06.013. https://www.sciencedirect.com/science/article/pii/S0896627317305111

Shen, J., Blute, T. A., Liberti, W. A., Yen, W., Liberti, D. C., Kotten, D. N., . . . Gardner, T. J. (2017). Songbird organotypic culture as an in vitro model for interrogating sparse sequencing networks. bioRxiv, 164228. doi: 10.1101/164228. http://biorxiv.org/content/early/2017/07/17/164228.abstract

Smith, G. B., & Fitzpatrick, D. (2016). Viral Injection and Cranial Window Implantation for In Vivo Two-Photon Imaging. In S. D. Schwartzbach, O. Skalli & T. Schikorski (Eds.), High-Resolution Imaging of Cellular Proteins: Methods and Protocols (pp. 171-185). New York, NY: Springer New York.

Srinivasan, R., Huang, B. S., Venugopal, S., Johnston, A. D., Chai, H., Zeng, H., . . . Khakh, B. S. (2015). Ca2+ signaling in astrocytes from Ip3r2−/− mice in brain slices and during startle responses in vivo. Nature Neuroscience, 18(5), 708-717. doi: 10.1038/nn.4001. https://doi.org/10.1038/nn.4001

Stein, I. S., Hill, T. C., Oh, W. C., Parajuli, L. K., & Zito, K. (2019). Two-Photon Glutamate Uncaging to Study Structural and Functional Plasticity of Dendritic Spines. In E. Hartveit (Ed.), Multiphoton Microscopy (pp. 65-85). New York, NY: Springer New York.

Takahashi, N., Moberg, S., Zolnik, T. A., Catanese, J., Sachdev, R. N. S., Larkum, M. E., & Jaeger, D. (2021). Thalamic input to motor cortex facilitates goal-directed action initiation. Current Biology. doi: https://doi.org/10.1016/j.cub.2021.06.089. https://www.sciencedirect.com/science/article/pii/S0960982221009180

Takasaki, K., Abbasi-Asl, R., & Waters, J. (2020). Superficial Bound of the Depth Limit of Two-Photon Imaging in Mouse Brain. eNeuro, 7(1), ENEURO.0255-0219.2019. doi: 10.1523/eneuro.0255-19.2019. https://pubmed.ncbi.nlm.nih.gov/31907211

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6984806/

Tan, H. L., Roth, R. H., Graves, A. R., Cudmore, R. H., & Huganir, R. L. (2020). Lamina-specific AMPA receptor dynamics following visual deprivation in vivo. eLife, 9, e52420. doi: 10.7554/eLife.52420. https://doi.org/10.7554/eLife.52420

Tang, A. D., Bennett, W., Bindoff, A. D., Collins, J., Garry, M. I., Summers, J. J., . . . Canty, A. J. (2021). Low intensity repetitive transcranial magnetic stimulation drives structural synaptic plasticity in the young and aged motor cortex. bioRxiv, 2021.2003.2010.434706. doi: 10.1101/2021.03.10.434706. http://biorxiv.org/content/early/2021/03/11/2021.03.10.434706.abstract

Thomas, C. I., Ryan, M. A., Scholl, B., Guerrero-Given, D., Fitzpatrick, D., & Kamasawa, N. (2021). Targeting Functionally Characterized Synaptic Architecture Using Inherent Fiducials and 3D Correlative Microscopy. Microscopy and Microanalysis, 27(1), 156-169. doi: Doi: 10.1017/s1431927620024757. https://www.cambridge.org/core/article/targeting-functionally-characteri...

Tiriac, A., Smith, B. E., & Feller, M. B. (2018). Light Prior to Eye Opening Promotes Retinal Waves and Eye-Specific Segregation. Neuron, 100(5), 1059-1065.e1054. doi: https://doi.org/10.1016/j.neuron.2018.10.011. https://www.sciencedirect.com/science/article/pii/S0896627318308997

Tran, C. H. T., Peringod, G., & Gordon, G. R. (2018). Astrocytes Integrate Behavioral State and Vascular Signals during Functional Hyperemia. Neuron, 100(5), 1133-1148.e1133. doi: https://doi.org/10.1016/j.neuron.2018.09.045. https://www.sciencedirect.com/science/article/pii/S089662731830847X

Tran-Van-Minh, A., Rebola, N., Hoehne, A., & DiGregorio, D. A. (2019). Two-Photon Neurotransmitter Uncaging for the Study of Dendritic Integration. In E. Hartveit (Ed.), Multiphoton Microscopy (pp. 33-64). New York, NY: Springer New York.

Tsutsumi, S., Chadney, O., Yiu, T.-L., Bäumler, E., Faraggiana, L., Beau, M., & Häusser, M. (2020). Purkinje Cell Activity Determines the Timing of Sensory-Evoked Motor Initiation. Cell Reports, 33(12), 108537. doi: https://doi.org/10.1016/j.celrep.2020.108537. https://www.sciencedirect.com/science/article/pii/S2211124720315266

Tsutsumi, S., Hidaka, N., Isomura, Y., Matsuzaki, M., Sakimura, K., Kano, M., & Kitamura, K. (2019). Modular organization of cerebellar climbing fiber inputs during goal-directed behavior. eLife, 8, e47021. doi: 10.7554/eLife.47021. https://doi.org/10.7554/eLife.47021

Tyson, A. L., Rousseau, C. V., Niedworok, C. J., Keshavarzi, S., Tsitoura, C., Cossell, L., . . . Margrie, T. W. (2021). A deep learning algorithm for 3D cell detection in whole mouse brain image datasets. PLOS Computational Biology, 17(5), e1009074. doi: 10.1371/journal.pcbi.1009074. https://doi.org/10.1371/journal.pcbi.1009074

Vavladeli, A., Daigle, T., Zeng, H., Crochet, S., & Petersen, C. C. H. (2020). Projection-specific Activity of Layer 2/3 Neurons Imaged in Mouse Primary Somatosensory Barrel Cortex During a Whisker Detection Task. Function, 1(zqaa008). doi: 10.1093/function/zqaa008. https://doi.org/10.1093/function/zqaa008

Wagner, M. J., Kim, T. H., Kadmon, J., Nguyen, N. D., Ganguli, S., Schnitzer, M. J., & Luo, L. (2019). Shared Cortex-Cerebellum Dynamics in the Execution and Learning of a Motor Task. Cell, 177(3), 669-682.e624. doi: https://doi.org/10.1016/j.cell.2019.02.019. https://www.sciencedirect.com/science/article/pii/S0092867419301680

Wagner, M. J., Kim, T. H., Savall, J., Schnitzer, M. J., & Luo, L. (2017). Cerebellar granule cells encode the expectation of reward. Nature, 544(7648), 96-100. doi: 10.1038/nature21726. https://doi.org/10.1038/nature21726

Wang, C.-C., Moorhouse, S., Stain, C., Seymour, M., Green, E., Penfield, S., & Moger, J. (2018). In situ chemically specific mapping of agrochemical seed coatings using stimulated Raman scattering microscopy. [https://doi.org/10.1002/jbio.201800108]. Journal of Biophotonics, 11(11), e201800108. doi: https://doi.org/10.1002/jbio.201800108. https://doi.org/10.1002/jbio.201800108

Wang, K., Du, Y., Liu, H., Gan, M., Tong, S., Wen, W., . . . Qiu, P. (2019). Visualizing the “sandwich” structure of osteocytes in their native environment deep in bone in vivo. [https://doi.org/10.1002/jbio.201800360]. Journal of Biophotonics, 12(4), e201800360. doi: https://doi.org/10.1002/jbio.201800360. https://doi.org/10.1002/jbio.201800360

Wang, K., Pan, Y., Tong, S., Chen, X., Lu, Y., & Qiu, P. (2021). Deep-skin multiphoton microscopy in vivo excited at 1600 nm: A comparative investigation with silicone oil and deuterium dioxide immersion. [https://doi.org/10.1002/jbio.202100076]. Journal of Biophotonics, n/a(n/a), e202100076. doi: https://doi.org/10.1002/jbio.202100076. https://doi.org/10.1002/jbio.202100076

Wang, K., Wen, W., Liu, H., Du, Y., Zhuang, Z., & Qiu, P. (2018). Transmittance Characterization of Objective Lenses Covering all Four Near Infrared Optical Windows and its Application to Three-Photon Microscopy Excited at 1820 nm. IEEE Photonics Journal, 10(3), 1-7. doi: 10.1109/jphot.2018.2828435. 

Wang, K., Wen, W., Wang, Y., Wang, K., He, J., Wang, J., . . . Qiu, P. (2017). Order-of-magnitude multiphoton signal enhancement based on characterization of absorption spectra of immersion oils at the 1700-nm window. Optics Express, 25(6), 5909-5916. doi: 10.1364/oe.25.005909. http://www.opticsexpress.org/abstract.cfm?URI=oe-25-6-5909

Wang, Y., Wang, K., Wen, W., & Qiu, P. (2016). Comparison of Signal Detection of GaAsP and GaAs PMTs for Multiphoton Microscopy at the 1700-nm window. IEEE Photonics Journal, 8(3), 1-6. doi: 10.1109/jphot.2016.2570005. 

Weisenburger, S., Tejera, F., Demas, J., Chen, B., Manley, J., Sparks, F. T., . . . Vaziri, A. (2019). Volumetric Ca2+ Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy. Cell, 177(4), 1050-1066.e1014. doi: https://doi.org/10.1016/j.cell.2019.03.011. https://www.sciencedirect.com/science/article/pii/S0092867419302739

Wilson, D. E., Scholl, B., & Fitzpatrick, D. (2018). Differential tuning of excitation and inhibition shapes direction selectivity in ferret visual cortex. Nature, 560(7716), 97-101. doi: 10.1038/s41586-018-0354-1. https://doi.org/10.1038/s41586-018-0354-1

Wilson, D. E., Smith, G. B., Jacob, A. L., Walker, T., Dimidschstein, J., Fishell, G., & Fitzpatrick, D. (2017). GABAergic Neurons in Ferret Visual Cortex Participate in Functionally Specific Networks. Neuron, 93(5), 1058-1065.e1054. doi: https://doi.org/10.1016/j.neuron.2017.02.035. https://www.sciencedirect.com/science/article/pii/S0896627317301435

Wilson, D. E., Whitney, D. E., Scholl, B., & Fitzpatrick, D. (2016). Orientation selectivity and the functional clustering of synaptic inputs in primary visual cortex. Nature Neuroscience, 19(8), 1003-1009. doi: 10.1038/nn.4323. https://doi.org/10.1038/nn.4323

Xin, Y., Zhong, L., Zhang, Y., Zhou, T., Pan, J., & Xu, N.-l. (2019). Sensory-to-Category Transformation via Dynamic Reorganization of Ensemble Structures in Mouse Auditory Cortex. Neuron, 103(5), 909-921.e906. doi: https://doi.org/10.1016/j.neuron.2019.06.004. https://www.sciencedirect.com/science/article/pii/S089662731930532X

Yao, S., Yuan, P., Ouellette, B., Zhou, T., Mortrud, M., Balaram, P., . . . Cetin, A. (2020). RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations. Nature Methods, 17(4), 422-429. doi: 10.1038/s41592-020-0774-3. https://doi.org/10.1038/s41592-020-0774-3

Yap, K., Drakew, A., Smilovic, D., Rietsche, M., Paul, M. H., Vuksic, M., . . . Deller, T. (2020). The actin-modulating protein synaptopodin mediates long-term survival of dendritic spines. eLife, 9, e62944. doi: 10.7554/eLife.62944. https://doi.org/10.7554/eLife.62944

Ye, L., Orynbayev, M., Zhu, X., Lim, E. Y., Dereddi, R. R., Agarwal, A., . . . Paukert, M. (2020). Ethanol abolishes vigilance-dependent astroglia network activation in mice by inhibiting norepinephrine release. Nature Communications, 11(1), 6157. doi: 10.1038/s41467-020-19475-5. https://doi.org/10.1038/s41467-020-19475-5

Yu, C.-H., Stirman, J. N., Yu, Y., Hira, R., & Smith, S. L. (2020). Diesel2p mesoscope with dual independent scan engines for flexible capture of dynamics in distributed neural circuitry. bioRxiv, 2020.2009.2020.305508. doi: 10.1101/2020.09.20.305508. http://biorxiv.org/content/early/2020/09/20/2020.09.20.305508.abstract

Yuhao, Y., Niraj, S., & Fake, L. (2020). Monitoring uptake of palmitic acid by glioma cells using stimulated Raman scattering microscopy. Paper presented at the Proc.SPIE.

Zeiger, W. A., Marosi, M., Saggi, S., Noble, N., Samad, I., & Portera-Cailliau, C. (2020). Plasticity after cortical stroke involves potentiating responses of pre-existing circuits but not functional remapping to new circuits. bioRxiv, 2020.2011.2009.375840. doi: 10.1101/2020.11.09.375840. http://biorxiv.org/content/early/2020/11/10/2020.11.09.375840.abstract

Zeiger, W. A., Marosi, M., Saggi, S., Noble, N., Samad, I., & Portera-Cailliau, C. (2021). Barrel cortex plasticity after photothrombotic stroke involves potentiating responses of pre-existing circuits but not functional remapping to new circuits. Nature Communications, 12(1), 3972. doi: 10.1038/s41467-021-24211-8. https://doi.org/10.1038/s41467-021-24211-8

Zhao, L., Li, Z., Vong, J. S. L., Chen, X., Lai, H.-M., Yan, L. Y. C., . . . Ko, H. (2020). Pharmacologically reversible zonation-dependent endothelial cell transcriptomic changes with neurodegenerative disease associations in the aged brain. Nature Communications, 11(1), 4413. doi: 10.1038/s41467-020-18249-3. https://doi.org/10.1038/s41467-020-18249-3

Zhao, Y., Bushey, D., Zhao, Y., Schreiter, E. R., Harrison, D. J., Wong, A. M., & Campbell, R. E. (2018). Inverse-response Ca2+ indicators for optogenetic visualization of neuronal inhibition. Scientific Reports, 8(1), 11758. doi: 10.1038/s41598-018-30080-x. https://doi.org/10.1038/s41598-018-30080-x

Zhou, L., Nho, K., Haddad, M. G., Cherepacha, N., Tubeleviciute-Aydin, A., Tsai, A. P., . . . LeBlanc, A. C. (2021). Rare CASP6N73T variant associated with hippocampal volume exhibits decreased proteolytic activity, synaptic transmission defect, and neurodegeneration. Scientific Reports, 11(1), 12695. doi: 10.1038/s41598-021-91367-0. https://doi.org/10.1038/s41598-021-91367-0

Zhu, Y., & Gabbiani, F. (2016). Fine and distributed subcellular retinotopy of excitatory inputs to the dendritic tree of a collision-detecting neuron. Journal of Neurophysiology, 115(6), 3101-3112. doi: 10.1152/jn.00044.2016. https://doi.org/10.1152/jn.00044.2016

Zhu, Y., & Gabbiani, F. (2018). Combined Two-Photon Calcium Imaging and Single-Ommatidium Visual Stimulation to Study Fine-Scale Retinotopy in Insects. In R. V. Sillitoe (Ed.), Extracellular Recording Approaches (pp. 185-206). New York, NY: Springer New York. https://doi.org/10.1007/978-1-4939-7549-5_10

Abdelfattah, A. S., J. Zheng, et al. (2023). "Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator." Neuron 111(10): 1547-1563.e1549. https://doi.org/10.1016/j.neuron.2023.03.009

Abrahamsson, T., C. Y. C. Chou, et al. (2017). "Differential Regulation of Evoked and Spontaneous Release by Presynaptic NMDA Receptors." Neuron 96(4): 839-855.e835. https://doi.org/10.1016/j.neuron.2017.09.030

Alberto, C.-M., C. Michelle, et al. (2010). "Delayed Stabilization of Dendritic Spines in Fragile X Mice." The Journal of Neuroscience 30(23): 7793. https://doi.org/10.1523/JNEUROSCI.0577-10.2010

Aleksander, S., S. Volker, et al. (2005). "NMDA Receptor Subunit-Dependent [Ca2+] Signaling in Individual Hippocampal Dendritic Spines." The Journal of Neuroscience 25(26): 6037. https://doi.org/10.1523/JNEUROSCI.1221-05.2005

Ali, F., D. M. Gerhard, et al. (2020). "Ketamine disinhibits dendrites and enhances calcium signals in prefrontal dendritic spines." Nature Communications 11(1): 72. https://doi.org/10.1038/s41467-019-13809-8

Andermann, M., A. Kerlin, et al. (2010). "Chronic cellular imaging of mouse visual cortex during operant behavior and passive viewing." Frontiers in Cellular Neuroscience 4. https://doi.org/10.3389/fncel.2010.00003

Andermann, Mark L., Nathan B. Gilfoy, et al. (2013). "Chronic Cellular Imaging of Entire Cortical Columns in Awake Mice Using Microprisms." Neuron 80(4): 900-913. https://doi.org/10.1016/j.neuron.2013.07.052

Andermann, Mark L., Aaron M. Kerlin, et al. (2011). "Functional Specialization of Mouse Higher Visual Cortical Areas." Neuron 72(6): 1025-1039. https://doi.org/10.1016/j.neuron.2011.11.013

Baeza-Lehnert, F., A. S. Saab, et al. (2019). "Non-Canonical Control of Neuronal Energy Status by the Na+ Pump." Cell Metabolism 29(3): 668-680.e664. https://doi.org/10.1016/j.cmet.2018.11.005

Barker, A. J. and H. Baier (2015). "Sensorimotor Decision Making in the Zebrafish Tectum." Current Biology 25(21): 2804-2814. https://doi.org/10.1016/j.cub.2015.09.055

Barnstedt, O., D. Owald, et al. (2016). "Memory-Relevant Mushroom Body Output Synapses Are Cholinergic." Neuron 89(6): 1237-1247. https://doi.org/10.1016/j.neuron.2016.02.015

Blot, A., M. M. Roth, et al. (2021). "Visual intracortical and transthalamic pathways carry distinct information to cortical areas." Neuron 109(12): 1996-2008.e1996. https://doi.org/10.1016/j.neuron.2021.04.017

Bock, R., J. H. Shin, et al. (2013). "Strengthening the accumbal indirect pathway promotes resilience to compulsive cocaine use." Nature Neuroscience 16(5): 632-638. https://doi.org/10.1038/nn.3369

Broussard, G. J., Y. Liang, et al. (2018). "In vivo measurement of afferent activity with axon-specific calcium imaging." Nature Neuroscience 21(9): 1272-1280. https://doi.org/10.1038/s41593-018-0211-4

Bugeon, S., J. Duffield, et al. (2022). "A transcriptomic axis predicts state modulation of cortical interneurons." Nature 607(7918): 330-338. https://doi.org/10.1038/s41586-022-04915-7

Bulovaite, E., Z. Qiu, et al. (2022). "A brain atlas of synapse protein lifetime across the mouse lifespan." Neuron 110(24): 4057-4073.e4058. https://doi.org/10.1016/j.neuron.2022.09.009

Burgess, C. P., A. Lak, et al. (2017). "High-Yield Methods for Accurate Two-Alternative Visual Psychophysics in Head-Fixed Mice." Cell Reports 20(10): 2513-2524. https://doi.org/10.1016/j.celrep.2017.08.047

Carter, A. G. and B. L. Sabatini (2004). "State-Dependent Calcium Signaling in Dendritic Spines of Striatal Medium Spiny Neurons." Neuron 44(3): 483-493. https://doi.org/10.1016/j.neuron.2004.10.013

Chatterjee, S., H. A. Sullivan, et al. (2018). "Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons." Nature Neuroscience 21(4): 638-646. https://doi.org/10.1038/s41593-018-0091-7

Chen, I. W., R. Emiliano, et al. (2019). "In Vivo Submillisecond Two-Photon Optogenetics with Temporally Focused Patterned Light." The Journal of Neuroscience 39(18): 3484. https://doi.org/10.1523/JNEUROSCI.1785-18.2018

Chen, N., H. Sugihara, et al. (2015). "An acetylcholine-activated microcircuit drives temporal dynamics of cortical activity." Nature Neuroscience 18(6): 892-902. https://doi.org/10.1038/nn.4002

Chen, T.-W., N. Li, et al. (2017). "A Map of Anticipatory Activity in Mouse Motor Cortex." Neuron 94(4): 866-879.e864. "A Map of Anticipatory Activity in Mouse Motor Cortex." https://pubmed.ncbi.nlm.nih.gov/28521137/

Chen, T.-W., T. J. Wardill, et al. (2013). "Ultrasensitive fluorescent proteins for imaging neuronal activity." Nature 499(7458): 295-300. https://doi.org/10.1038/nature12354

Cheriyamkunnel, S. J., S. Rose, et al. (2021). "A neuronal mechanism controlling the choice between feeding and sexual behaviors in Drosophila." Current Biology 31(19): 4231-4245.e4234. https://doi.org/10.1016/j.cub.2021.07.029

Chiu, C. Q., J. S. Martenson, et al. (2018). "Input-Specific NMDAR-Dependent Potentiation of Dendritic GABAergic Inhibition." Neuron 97(2): 368-377.e363. https://doi.org/10.1016/j.neuron.2017.12.032

Chu, J., Y. Oh, et al. (2016). "A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo." Nature Biotechnology 34(7): 760-767. https://doi.org/10.1038/nbt.3550

Clancy, K. B., A. C. Koralek, et al. (2014). "Volitional modulation of optically recorded calcium signals during neuroprosthetic learning." Nature Neuroscience 17(6): 807-809. https://doi.org/10.1038/nn.3712

Cruz Hernández, J. C., O. Bracko, et al. (2019). "Neutrophil adhesion in brain capillaries reduces cortical blood flow and impairs memory function in Alzheimer’s disease mouse models." Nature Neuroscience 22(3): 413-420. https://doi.org/10.1038/s41593-018-0329-4

Cruz-Martín, A., R. N. El-Danaf, et al. (2014). "A dedicated circuit links direction-selective retinal ganglion cells to the primary visual cortex." Nature 507(7492): 358-361. https://doi.org/10.1038/nature12989

Cynthia, X. H., A. C. Daniel, et al. (2017). "Tactile Defensiveness and Impaired Adaptation of Neuronal Activity in the Fmr1 Knock-Out Mouse Model of Autism." The Journal of Neuroscience 37(27): 6475. https://doi.org/10.1523/JNEUROSCI.0651-17.2017

Dana, H., T.-W. Chen, et al. (2014). "Thy1-GCaMP6 Transgenic Mice for Neuronal Population Imaging In Vivo." PLOS ONE 9(9): e108697. https://doi.org/10.1371/journal.pone.0108697

Dana, H., B. Mohar, et al. (2016). "Sensitive red protein calcium indicators for imaging neural activity." eLife 5: e12727. https://doi.org/10.7554/eLife.12727

Dana, H., Y. Sun, et al. (2019). "High-performance calcium sensors for imaging activity in neuronal populations and microcompartments." Nature Methods 16(7): 649-657. https://doi.org/10.1038/s41592-019-0435-6

De Paola, V., A. Holtmaat, et al. (2006). "Cell Type-Specific Structural Plasticity of Axonal Branches and Boutons in the Adult Neocortex." Neuron 49(6): 861-875. https://doi.org/10.1016/j.neuron.2006.02.017

Deverett, B., S. A. Koay, et al. (2018). "Cerebellar involvement in an evidence-accumulation decision-making task." eLife 7: e36781. "Cerebellar involvement in an evidence-accumulation decision-making task." https://pubmed.ncbi.nlm.nih.gov/30102151/

Diamanti, E. M., C. B. Reddy, et al. (2021). "Spatial modulation of visual responses arises in cortex with active navigation." eLife 10: e63705. https://doi.org/10.7554/eLife.63705

Díaz-García, C. M., C. Lahmann, et al. (2019). "Quantitative in vivo imaging of neuronal glucose concentrations with a genetically encoded fluorescence lifetime sensor." Journal of Neuroscience Research 97(8): 946-960. https://doi.org/10.1002/jnr.24433

Díaz-García, C. M., R. Mongeon, et al. (2017). "Neuronal Stimulation Triggers Neuronal Glycolysis and Not Lactate Uptake." Cell Metabolism 26(2): 361-374.e364. https://doi.org/10.1016/j.cmet.2017.06.021

Diering, G. H., R. S. Nirujogi, et al. (2017). "Homer1a drives homeostatic scaling-down of excitatory synapses during sleep." Science 355(6324): 511-515. https://www.science.org/doi/full/10.1126/science.aai8355

Ding, H., R. G. Smith, et al. (2016). "Species-specific wiring for direction selectivity in the mammalian retina." Nature 535(7610): 105-110. https://doi.org/10.1038/nature18609

Dipoppa, M., A. Ranson, et al. (2018). "Vision and Locomotion Shape the Interactions between Neuron Types in Mouse Visual Cortex." Neuron 98(3): 602-615.e608. https://doi.org/10.1016/j.neuron.2018.03.037

Dombeck, D. A., C. D. Harvey, et al. (2010). "Functional imaging of hippocampal place cells at cellular resolution during virtual navigation." Nature Neuroscience 13(11): 1433-1440. https://doi.org/10.1038/nn.2648

Dombeck, D. A., A. N. Khabbaz, et al. (2007). "Imaging Large-Scale Neural Activity with Cellular Resolution in Awake, Mobile Mice." Neuron 56(1): 43-57. "Imaging Large-Scale Neural Activity with Cellular Resolution in Awake, Mobile Mice." https://pubmed.ncbi.nlm.nih.gov/17920014/

Driscoll, L. N., N. L. Pettit, et al. (2017). "Dynamic Reorganization of Neuronal Activity Patterns in Parietal Cortex." Cell 170(5): 986-999.e916. https://doi.org/10.1016/j.cell.2017.07.021

Economo, M. N., N. G. Clack, et al. (2016). "A platform for brain-wide imaging and reconstruction of individual neurons." eLife 5: e10566. https://doi.org/10.7554/eLife.10566

Eliceiri, K. W., M. R. Berthold, et al. (2012). "Biological imaging software tools." Nature Methods 9(7): 697-710. https://doi.org/10.1038/nmeth.2084

Elizabeth, M. C. H. (2007). "Optical brain imaging in vivo: techniques and applications from animal to man." Journal of Biomedical Optics 12(5): 051402. https://pubmed.ncbi.nlm.nih.gov/17994863/

Engelhard, B., J. Finkelstein, et al. (2019). "Specialized coding of sensory, motor and cognitive variables in VTA dopamine neurons." Nature 570(7762): 509-513. https://doi.org/10.1038/s41586-019-1261-9

Felsenberg, J., O. Barnstedt, et al. (2017). "Re-evaluation of learned information in Drosophila." Nature 544(7649): 240-244. https://doi.org/10.1038/nature21716

Felsenberg, J., P. F. Jacob, et al. (2018). "Integration of Parallel Opposing Memories Underlies Memory Extinction." Cell 175(3): 709-722.e715. https://doi.org/10.1016/j.cell.2018.08.021

Filosa, A., Alison J. Barker, et al. (2016). "Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum." Neuron 90(3): 596-608. https://doi.org/10.1016/j.neuron.2016.03.014

Fischer, M. C., J. W. Wilson, et al. (2016). "Invited Review Article: Pump-probe microscopy." Review of Scientific Instruments 87(3). https://doi.org/10.1063/1.4943211

Fosque, B. F., Y. Sun, et al. (2015). "Labeling of active neural circuits in vivo with designed calcium integrators." Science 347(6223): 755-760. https://www.science.org/doi/abs/10.1126/science.1260922

Fratzl, A., A. M. Koltchev, et al. (2021). "Flexible inhibitory control of visually evoked defensive behavior by the ventral lateral geniculate nucleus." Neuron 109(23): 3810-3822.e3819. https://doi.org/10.1016/j.neuron.2021.09.003

Freeman, J., N. Vladimirov, et al. (2014). "Mapping brain activity at scale with cluster computing." Nature Methods 11(9): 941-950. https://doi.org/10.1038/nmeth.3041

Fujiwara, T., M. Brotas, et al. (2022). "Walking strides direct rapid and flexible recruitment of visual circuits for course control in Drosophila." Neuron 110(13): 2124-2138.e2128. https://doi.org/10.1016/j.neuron.2022.04.008

Gambino, F., S. Pagès, et al. (2014). "Sensory-evoked LTP driven by dendritic plateau potentials in vivo." Nature 515(7525): 116-119. https://doi.org/10.1038/nature13664

Gasselin, C., B. Hohl, et al. (2021). "Cell-type-specific nicotinic input disinhibits mouse barrel cortex during active sensing." Neuron 109(5): 778-787.e773. https://doi.org/10.1016/j.neuron.2020.12.018

Gill, J. V., G. M. Lerman, et al. (2020). "Precise Holographic Manipulation of Olfactory Circuits Reveals Coding Features Determining Perceptual Detection." Neuron 108(2): 382-393.e385. https://doi.org/10.1016/j.neuron.2020.07.034

Glück, C., K. D. Ferrari, et al. (2021). "Distinct signatures of calcium activity in brain mural cells." eLife 10: e70591. https://doi.org/10.7554/eLife.70591

Goel, A., D. A. Cantu, et al. (2018). "Impaired perceptual learning in a mouse model of Fragile X syndrome is mediated by parvalbumin neuron dysfunction and is reversible." Nature Neuroscience 21(10): 1404-1411. https://doi.org/10.1038/s41593-018-0231-0

Goltstein, P. M., S. Reinert, et al. (2021). "Mouse visual cortex areas represent perceptual and semantic features of learned visual categories." Nature Neuroscience 24(10): 1441-1451. https://doi.org/10.1038/s41593-021-00914-5

Gonçalves, J. T., J. E. Anstey, et al. (2013). "Circuit level defects in the developing neocortex of Fragile X mice." Nature Neuroscience 16(7): 903-909. https://doi.org/10.1038/nn.3415

Gray, N. W., R. M. Weimer, et al. (2006). "Rapid Redistribution of Synaptic PSD-95 in the Neocortex In Vivo." PLOS Biology 4(11): e370. https://doi.org/10.1371/journal.pbio.0040370

Gregor, T., D. W. Tank, et al. (2007). "Probing the Limits to Positional Information." Cell 130(1): 153-164. https://doi.org/10.1016/j.cell.2007.05.025

Gu, Y., S. Lewallen, et al. (2018). "A Map-like Micro-Organization of Grid Cells in the Medial Entorhinal Cortex." Cell 175(3): 736-750.e730. https://doi.org/10.1016/j.cell.2018.08.066

Hamilton, Andrew M., Won C. Oh, et al. (2012). "Activity-Dependent Growth of New Dendritic Spines Is Regulated by the Proteasome." Neuron 74(6): 1023-1030. https://doi.org/10.1016/j.neuron.2012.04.031

Han, Y., J. M. Kebschull, et al. (2018). "The logic of single-cell projections from visual cortex." Nature 556(7699): 51-56. https://doi.org/10.1038/nature26159

Harvey, C. D., A. G. Ehrhardt, et al. (2008). "A genetically encoded fluorescent sensor of ERK activity." Proceedings of the National Academy of Sciences 105(49): 19264-19269. https://doi.org/10.1073/pnas.080459810

Harvey, C. D. and K. Svoboda (2007). "Locally dynamic synaptic learning rules in pyramidal neuron dendrites." Nature 450(7173): 1195-1200. https://doi.org/10.1038/nature06416

Harward, S. C., N. G. Hedrick, et al. (2016). "Autocrine BDNF–TrkB signalling within a single dendritic spine." Nature 538(7623): 99-103. https://doi.org/10.1038/nature19766

Hatim, A. Z., G. B. Bart, et al. (2012). "A Cre-Dependent GCaMP3 Reporter Mouse for Neuronal Imaging In Vivo." The Journal of Neuroscience 32(9): 3131. https://doi.org/10.1523/JNEUROSCI.4469-11.2012

He, B., K. Doubrovinski, et al. (2014). "Apical constriction drives tissue-scale hydrodynamic flow to mediate cell elongation." Nature 508(7496): 392-396. https://doi.org/10.1038/nature13070

Hedrick, N. G., S. C. Harward, et al. (2016). "Rho GTPase complementation underlies BDNF-dependent homo- and heterosynaptic plasticity." Nature 538(7623): 104-108. https://doi.org/10.1038/nature19784

Hefendehl, J. K., J. LeDue, et al. (2016). "Mapping synaptic glutamate transporter dysfunction in vivo to regions surrounding Aβ plaques by iGluSnFR two-photon imaging." Nature Communications 7(1): 13441. https://doi.org/10.1038/ncomms13441

Helmchen, F. and W. Denk (2005). "Deep tissue two-photon microscopy." Nature Methods 2(12): 932-940. https://doi.org/10.1038/nmeth818

Heneka, M. T., F. Nadrigny, et al. (2010). "Locus ceruleus controls Alzheimer's disease pathology by modulating microglial functions through norepinephrine." Proceedings of the National Academy of Sciences 107(13): 6058-6063. https://doi.org/10.1073/pnas.0909586107

Hesse, M., M. Doengi, et al. (2018). "Midbody Positioning and Distance Between Daughter Nuclei Enable Unequivocal Identification of Cardiomyocyte Cell Division in Mice." Circulation Research 123(9): 1039-1052. https://www.ahajournals.org/doi/full/10.1161/CIRCRESAHA.118.312792

Higley, M. J. and B. L. Sabatini (2010). "Competitive regulation of synaptic Ca2+ influx by D2 dopamine and A2A adenosine receptors." Nature Neuroscience 13(8): 958-966. https://doi.org/10.1038/nn.2592

Holbro, N., Å. Grunditz, et al. (2009). "Differential distribution of endoplasmic reticulum controls metabotropic signaling and plasticity at hippocampal synapses." Proceedings of the National Academy of Sciences 106(35): 15055-15060. https://doi.org/10.1073/pnas.0905110106

Holtmaat, A., T. Bonhoeffer, et al. (2009). "Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window." Nature Protocols 4(8): 1128-1144. https://doi.org/10.1038/nprot.2009.89

Holtmaat, A., L. Wilbrecht, et al. (2006). "Experience-dependent and cell-type-specific spine growth in the neocortex." Nature 441(7096): 979-983. https://doi.org/10.1038/nature04783

Holtmaat, A. J. G. D., J. T. Trachtenberg, et al. (2005). "Transient and Persistent Dendritic Spines in the Neocortex In Vivo." Neuron 45(2): 279-291. https://doi.org/10.1016/j.neuron.2005.01.003

Horton, N. G., K. Wang, et al. (2013). "In vivo three-photon microscopy of subcortical structures within an intact mouse brain." Nature Photonics 7(3): 205-209. https://doi.org/10.1038/nphoton.2012.336

Hösli, L., N. Binini, et al. (2022). "Decoupling astrocytes in adult mice impairs synaptic plasticity and spatial learning." Cell Reports 38(10). https://doi.org/10.1016/j.celrep.2022.110484

Hösli, L., M. Zuend, et al. (2022). "Direct vascular contact is a hallmark of cerebral astrocytes." Cell Reports 39(1). https://doi.org/10.1016/j.celrep.2022.110599

Huang, K.-H., P. Rupprecht, et al. (2020). "A virtual reality system to analyze neural activity and behavior in adult zebrafish." Nature Methods 17(3): 343-351. https://doi.org/10.1038/s41592-020-0759-2

Huber, D., D. A. Gutnisky, et al. (2012). "Multiple dynamic representations in the motor cortex during sensorimotor learning." Nature 484(7395): 473-478. https://doi.org/10.1038/nature11039

Huber, D., L. Petreanu, et al. (2008). "Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice." Nature 451(7174): 61-64. https://doi.org/10.1038/nature06445

Hwang, F.-J., R. H. Roth, et al. (2022). "Motor learning selectively strengthens cortical and striatal synapses of motor engram neurons." Neuron 110(17): 2790-2801.e2795. https://doi.org/10.1016/j.neuron.2022.06.006

Iacaruso, M. F., I. T. Gasler, et al. (2017). "Synaptic organization of visual space in primary visual cortex." Nature 547(7664): 449-452. https://doi.org/10.1038/nature23019

Ibrahim, Leena A., L. Mesik, et al. (2016). "Cross-Modality Sharpening of Visual Cortical Processing through Layer-1-Mediated Inhibition and Disinhibition." Neuron 89(5): 1031-1045. https://doi.org/10.1016/j.neuron.2016.01.027

Inoue, M., A. Takeuchi, et al. (2019). "Rational Engineering of XCaMPs, a Multicolor GECI Suite for In Vivo Imaging of Complex Brain Circuit Dynamics." Cell 177(5): 1346-1360.e1324. https://doi.org/10.1016/j.cell.2019.04.007

Ivar, S. S., A. G. John, et al. (2015). "Non-Ionotropic NMDA Receptor Signaling Drives Activity-Induced Dendritic Spine Shrinkage." The Journal of Neuroscience 35(35): 12303. https://doi.org/10.1523/JNEUROSCI.4289-14.2015

Jacob, P. F. and S. Waddell (2020). "Spaced Training Forms Complementary Long-Term Memories of Opposite Valence in Drosophila." Neuron 106(6): 977-991.e974. https://doi.org/10.1016/j.neuron.2020.03.013

Jaepel, J., M. Hübener, et al. (2017). "Lateral geniculate neurons projecting to primary visual cortex show ocular dominance plasticity in adult mice." Nature Neuroscience 20(12): 1708-1714. https://doi.org/10.1038/s41593-017-0021-0

Jasper, A., C. Tsai-Wen, et al. (2012). "Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging." The Journal of Neuroscience 32(40): 13819. https://doi.org/10.1523/JNEUROSCI.2601-12.2012

Jing, M., P. Zhang, et al. (2018). "A genetically encoded fluorescent acetylcholine indicator for in vitro and in vivo studies." Nature Biotechnology 36(8): 726-737. https://doi.org/10.1038/nbt.4184

Kerlin, A. M., M. L. Andermann, et al. (2010). "Broadly tuned response properties of diverse inhibitory neuron subtypes in mouse visual cortex." Neuron 67(5): 858-871. https://pubmed.ncbi.nlm.nih.gov/20826316/

Kim, S. S., A. M. Hermundstad, et al. (2019). "Generation of stable heading representations in diverse visual scenes." Nature 576(7785): 126-131. https://doi.org/10.1038/s41586-019-1767-1

Kim, S. S., H. Rouault, et al. (2017). "Ring attractor dynamics in the Drosophila central brain." Science 356(6340): 849-853. https://www.science.org/doi/full/10.1126/science.aal4835

Klapoetke, N. C., A. Nern, et al. (2017). "Ultra-selective looming detection from radial motion opponency." Nature 551(7679): 237-241. https://doi.org/10.1038/nature24626

Koizumi, K., Y. Hattori, et al. (2018). "Apoε4 disrupts neurovascular regulation and undermines white matter integrity and cognitive function." Nature Communications 9(1): 3816. https://doi.org/10.1038/s41467-018-06301-2

Kong, C., C. Pilger, et al. (2020). "High-contrast, fast chemical imaging by coherent Raman scattering using a self-synchronized two-colour fibre laser." Light: Science & Applications 9(1): 25. https://doi.org/10.1038/s41377-020-0259-2

Koveal, D., P. C. Rosen, et al. (2022). "A high-throughput multiparameter screen for accelerated development and optimization of soluble genetically encoded fluorescent biosensors." Nature Communications 13(1): 2919. https://doi.org/10.1038/s41467-022-30685-x

Kuhlman, S. J., N. D. Olivas, et al. (2013). "A disinhibitory microcircuit initiates critical-period plasticity in the visual cortex." Nature 501(7468): 543-546. https://doi.org/10.1038/nature12485

Lai, H. M., Y. Tang, et al. (2022). "Antibody stabilization for thermally accelerated deep immunostaining." Nature Methods 19(9): 1137-1146. https://doi.org/10.1038/s41592-022-01569-1

Lecoq, J., J. Savall, et al. (2014). "Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging." Nature Neuroscience 17(12): 1825-1829. https://doi.org/10.1038/nn.3867

Lee, K.-S., X. Huang, et al. (2016). "Topology of ON and OFF inputs in visual cortex enables an invariant columnar architecture." Nature 533(7601): 90-94. https://doi.org/10.1038/nature17941

Li, B., T. P. Nguyen, et al. (2020). "Inhibition of impulsive action by projection-defined prefrontal pyramidal neurons." Proceedings of the National Academy of Sciences 117(29): 17278-17287. https://doi.org/10.1073/pnas.2000523117

Li, X., Y. Li, et al. (2023). "Real-time denoising enables high-sensitivity fluorescence time-lapse imaging beyond the shot-noise limit." Nature Biotechnology 41(2): 282-292. https://doi.org/10.1038/s41587-022-01450-8

Li, Y., H. Lu, et al. (2012). "Clonally related visual cortical neurons show similar stimulus feature selectivity." Nature 486(7401): 118-121. https://doi.org/10.1038/nature11110

Lin, Q., J. Manley, et al. (2020). "Cerebellar Neurodynamics Predict Decision Timing and Outcome on the Single-Trial Level." Cell 180(3): 536-551.e517. https://doi.org/10.1016/j.cell.2019.12.018

Lin, S., D. Owald, et al. (2014). "Neural correlates of water reward in thirsty Drosophila." Nature Neuroscience 17(11): 1536-1542. https://doi.org/10.1038/nn.3827

Lohse, M., J. C. Dahmen, et al. (2021). "Subcortical circuits mediate communication between primary sensory cortical areas in mice." Nature Communications 12(1): 3916. https://doi.org/10.1038/s41467-021-24200-x

Lu, J., A. H. Behbahani, et al. (2022). "Transforming representations of movement from body- to world-centric space." Nature 601(7891): 98-104. https://doi.org/10.1038/s41586-021-04191-x

Lu, R., W. Sun, et al. (2017). "Video-rate volumetric functional imaging of the brain at synaptic resolution." Nature Neuroscience 20(4): 620-628. https://doi.org/10.1038/nn.4516

Lutz, S. E., J. R. Smith, et al. (2017). "Caveolin1 Is Required for Th1 Cell Infiltration, but Not Tight Junction Remodeling, at the Blood-Brain Barrier in Autoimmune Neuroinflammation." Cell Reports 21(8): 2104-2117. https://doi.org/10.1016/j.celrep.2017.10.094

Ma, L., J. Day-Cooney, et al. (2022). "Locomotion activates PKA through dopamine and adenosine in striatal neurons." Nature 611(7937): 762-768. https://doi.org/10.1038/s41586-022-05407-4

Mächler, P., Matthias T. Wyss, et al. (2016). "In Vivo Evidence for a Lactate Gradient from Astrocytes to Neurons." Cell Metabolism 23(1): 94-102. https://doi.org/10.1016/j.cmet.2015.10.010

Mahn, M., I. Saraf-Sinik, et al. (2021). "Efficient optogenetic silencing of neurotransmitter release with a mosquito rhodopsin." Neuron 109(10): 1621-1635.e1628. https://doi.org/10.1016/j.neuron.2021.03.013

Maisak, M. S., J. Haag, et al. (2013). "A directional tuning map of Drosophila elementary motion detectors." Nature 500(7461): 212-216. https://doi.org/10.1038/nature12320

Major, G., A. Polsky, et al. (2008). "Spatiotemporally Graded NMDA Spike/Plateau Potentials in Basal Dendrites of Neocortical Pyramidal Neurons." Journal of Neurophysiology 99(5): 2584-2601. https://doi.org/10.1152/jn.00011.2008

Makino, H. and T. Komiyama (2015). "Learning enhances the relative impact of top-down processing in the visual cortex." Nature Neuroscience 18(8): 1116-1122. https://doi.org/10.1038/nn.4061

Manifold, B., S. Men, et al. (2021). "A versatile deep learning architecture for classification and label-free prediction of hyperspectral images." Nature Machine Intelligence 3(4): 306-315. https://doi.org/10.1038/s42256-021-00309-y

Mansour, A. A., J. T. Gonçalves, et al. (2018). "An in vivo model of functional and vascularized human brain organoids." Nature Biotechnology 36(5): 432-441. https://doi.org/10.1038/nbt.4127

Marques, T., J. Nguyen, et al. (2018). "The functional organization of cortical feedback inputs to primary visual cortex." Nature Neuroscience 21(5): 757-764. https://doi.org/10.1038/s41593-018-0135-z

Marshel, J. H., T. Mori, et al. (2010). "Targeting Single Neuronal Networks for Gene Expression and Cell Labeling In Vivo." Neuron 67(4): 562-574. https://doi.org/10.1016/j.neuron.2010.08.001

Marvin, J. S., B. G. Borghuis, et al. (2013). "An optimized fluorescent probe for visualizing glutamate neurotransmission." Nature Methods 10(2): 162-170. https://doi.org/10.1038/nmeth.2333

Massengill, C. I., L. Bayless-Edwards, et al. (2022). "Sensitive genetically encoded sensors for population and subcellular imaging of cAMP in vivo." Nature Methods 19(11): 1461-1471. https://doi.org/10.1038/s41592-022-01646-5

Mattiazzi Usaj, M., E. B. Styles, et al. (2016). "High-Content Screening for Quantitative Cell Biology." Trends in Cell Biology 26(8): 598-611. https://doi.org/10.1016/j.tcb.2016.03.008

Meyer, D. J., C. M. Díaz-García, et al. (2022). "The Na+/K+ pump dominates control of glycolysis in hippocampal dentate granule cells." eLife 11: e81645. https://doi.org/10.7554/eLife.81645

Michele, C., M. Bohumil, et al. (2014). "The Relationship between PSD-95 Clustering and Spine Stability In Vivo." The Journal of Neuroscience 34(6): 2075. https://doi.org/10.1523/JNEUROSCI.3353-13.2014

Moeyaert, B., G. Holt, et al. (2018). "Improved methods for marking active neuron populations." Nature Communications 9(1): 4440. https://doi.org/10.1038/s41467-018-06935-2

Moll, F. W., D. Kranz, et al. (2023). "Thalamus drives vocal onsets in the zebra finch courtship song." Nature 616(7955): 132-136. https://doi.org/10.1038/s41586-023-05818-x

Moore, A. K., A. P. Weible, et al. (2018). "Rapid Rebalancing of Excitation and Inhibition by Cortical Circuitry." Neuron 97(6): 1341-1355.e1346. https://doi.org/10.1016/j.neuron.2018.01.045

Morcos, A. S. and C. D. Harvey (2016). "History-dependent variability in population dynamics during evidence accumulation in cortex." Nature Neuroscience 19(12): 1672-1681. https://doi.org/10.1038/nn.4403

Murakoshi, H., M. E. Shin, et al. (2017). "Kinetics of Endogenous CaMKII Required for Synaptic Plasticity Revealed by Optogenetic Kinase Inhibitor." Neuron 94(1): 37-47.e35. https://doi.org/10.1016/j.neuron.2017.02.036

Murakoshi, H., H. Wang, et al. (2011). "Local, persistent activation of Rho GTPases during plasticity of single dendritic spines." Nature 472(7341): 100-104. https://doi.org/10.1038/nature09823

Ngo-Anh, T. J., B. L. Bloodgood, et al. (2005). "SK channels and NMDA receptors form a Ca2+-mediated feedback loop in dendritic spines." Nature Neuroscience 8(5): 642-649. https://doi.org/10.1038/nn1449

Niels, N., B. Svenja, et al. (2021). "Cell-Type-Specific Dynamics of Calcium Activity in Cortical Circuits over the Course of Slow-Wave Sleep and Rapid Eye Movement Sleep." The Journal of Neuroscience 41(19): 4212. https://doi.org/10.1523/JNEUROSCI.1957-20.2021

Niethard, N., M. Hasegawa, et al. (2016). "Sleep-Stage-Specific Regulation of Cortical Excitation and Inhibition." Current Biology 26(20): 2739-2749. https://doi.org/10.1016/j.cub.2016.08.035

Nojima, T., A. Rings, et al. (2021). "A sex-specific switch between visual and olfactory inputs underlies adaptive sex differences in behavior." Current Biology 31(6): 1175-1191.e1176. https://doi.org/10.1016/j.cub.2020.12.047

O'Connor, D. H., S. P. Peron, et al. (2010). "Neural activity in barrel cortex underlying vibrissa-based object localization in mice." Neuron 67(6): 1048-1061. https://doi.org/10.1016/j.neuron.2010.08.026

Oh, W. C., T. C. Hill, et al. (2013). "Synapse-specific and size-dependent mechanisms of spine structural plasticity accompanying synaptic weakening." Proceedings of the National Academy of Sciences 110(4): E305-E312. https://doi.org/10.1073/pnas.1214705110

Oh, Won C., Laxmi K. Parajuli, et al. (2015). "Heterosynaptic Structural Plasticity on Local Dendritic Segments of Hippocampal CA1 Neurons." Cell Reports 10(2): 162-169. https://doi.org/10.1016/j.celrep.2014.12.016

Oheim, M., D. J. Michael, et al. (2006). "Principles of two-photon excitation fluorescence microscopy and other nonlinear imaging approaches." Advanced Drug Delivery Reviews 58(7): 788-808. https://doi.org/10.1016/j.addr.2006.07.005

Okubo, T. S., P. Patella, et al. (2020). "A Neural Network for Wind-Guided Compass Navigation." Neuron 107(5): 924-940.e918. https://doi.org/10.1016/j.neuron.2020.06.022

Owald, D., J. Felsenberg, et al. (2015). "Activity of Defined Mushroom Body Output Neurons Underlies Learned Olfactory Behavior in Drosophila." Neuron 86(2): 417-427. https://doi.org/10.1016/j.neuron.2015.03.025

Park, H. Y., H. Lim, et al. (2014). "Visualization of Dynamics of Single Endogenous mRNA Labeled in Live Mouse." Science 343(6169): 422-424. https://www.science.org/doi/abs/10.1126/science.1239200

Parker, J. G., J. D. Marshall, et al. (2018). "Diametric neural ensemble dynamics in parkinsonian and dyskinetic states." Nature 557(7704): 177-182. https://doi.org/10.1038/s41586-018-0090-6

Patriarchi, T., J. R. Cho, et al. (2018). "Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors." Science 360(6396): eaat4422. https://www.science.org/doi/full/10.1126/science.aat4422

Patterson, M. A., E. M. Szatmari, et al. (2010). "AMPA receptors are exocytosed in stimulated spines and adjacent dendrites in a Ras-ERK–dependent manner during long-term potentiation." Proceedings of the National Academy of Sciences 107(36): 15951-15956. https://doi.org/10.1073/pnas.0913875107

Peñagarikano, O., Brett S. Abrahams, et al. (2011). "Absence of CNTNAP2 Leads to Epilepsy, Neuronal Migration Abnormalities, and Core Autism-Related Deficits." Cell 147(1): 235-246. https://doi.org/10.1016/j.cell.2011.08.040

Perez-Alvarez, A., S. Yin, et al. (2020). "Endoplasmic reticulum visits highly active spines and prevents runaway potentiation of synapses." Nature Communications 11(1): 5083. https://doi.org/10.1038/s41467-020-18889-5

Perisse, E., D. Owald, et al. (2016). "Aversive Learning and Appetitive Motivation Toggle Feed-Forward Inhibition in the Drosophila Mushroom Body." Neuron 90(5): 1086-1099. https://doi.org/10.1016/j.neuron.2016.04.034

Peron, S., R. Pancholi, et al. (2020). "Recurrent interactions in local cortical circuits." Nature 579(7798): 256-259. https://doi.org/10.1038/s41586-020-2062-x

Peron, Simon P., J. Freeman, et al. (2015). "A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior." Neuron 86(3): 783-799. https://doi.org/10.1016/j.neuron.2015.03.027

Petreanu, L., D. A. Gutnisky, et al. (2012). "Activity in motor–sensory projections reveals distributed coding in somatosensation." Nature 489(7415): 299-303. https://doi.org/10.1038/nature11321

Petrik, D., M. H. Myoga, et al. (2018). "Epithelial Sodium Channel Regulates Adult Neural Stem Cell Proliferation in a Flow-Dependent Manner." Cell Stem Cell 22(6): 865-878.e868. https://doi.org/10.1016/j.stem.2018.04.016

Peyman, G., J. T. Gonçalves, et al. (2009). "Internally Mediated Developmental Desynchronization of Neocortical Network Activity." The Journal of Neuroscience 29(35): 10890. https://doi.org/10.1523/JNEUROSCI.2012-09.2009

Picardo, Michel A., J. Merel, et al. (2016). "Population-Level Representation of a Temporal Sequence Underlying Song Production in the Zebra Finch." Neuron 90(4): 866-876. https://doi.org/10.1016/j.neuron.2016.02.016

Picot, A., S. Dominguez, et al. (2018). "Temperature Rise under Two-Photon Optogenetic Brain Stimulation." Cell Reports 24(5): 1243-1253.e1245. https://doi.org/10.1016/j.celrep.2018.06.119

Polack, P.-O., J. Friedman, et al. (2013). "Cellular mechanisms of brain state–dependent gain modulation in visual cortex." Nature Neuroscience 16(9): 1331-1339. https://doi.org/10.1038/nn.3464

Prevedel, R., A. J. Verhoef, et al. (2016). "Fast volumetric calcium imaging across multiple cortical layers using sculpted light." Nature Methods 13(12): 1021-1028. https://doi.org/10.1038/nmeth.4040

Qin, Z., Z. She, et al. (2022). "Deep tissue multi-photon imaging using adaptive optics with direct focus sensing and shaping." Nature Biotechnology 40(11): 1663-1671. https://doi.org/10.1038/s41587-022-01343-w

Reinert, S., M. Hübener, et al. (2021). "Mouse prefrontal cortex represents learned rules for categorization." Nature 593(7859): 411-417. https://doi.org/10.1038/s41586-021-03452-z

Ribeiro, I. M. A., M. Drews, et al. (2018). "Visual Projection Neurons Mediating Directed Courtship in Drosophila." Cell 174(3): 607-621.e618. https://doi.org/10.1016/j.cell.2018.06.020

Ricardo, M., E. A. James, et al. (2013). "Altered Synaptic Dynamics during Normal Brain Aging." The Journal of Neuroscience 33(9): 4094. https://doi.org/10.1523/JNEUROSCI.4825-12.2013

Rice, H. C., D. de Malmazet, et al. (2019). "Secreted amyloid-2; precursor protein functions as a GABABR1a ligand to modulate synaptic transmission." Science 363(6423): eaao4827. https://www.science.org/doi/full/10.1126/science.aao4827

Rickgauer, J. P., K. Deisseroth, et al. (2014). "Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields." Nature Neuroscience 17(12): 1816-1824. https://doi.org/10.1038/nn.3866

Robles, E., E. Laurell, et al. (2014). "The Retinal Projectome Reveals Brain-Area-Specific Visual Representations Generated by Ganglion Cell Diversity." Current Biology 24(18): 2085-2096. https://doi.org/10.1016/j.cub.2014.07.080

Romano, Sebastián A., T. Pietri, et al. (2015). "Spontaneous Neuronal Network Dynamics Reveal Circuit's Functional Adaptations for Behavior." Neuron 85(5): 1070-1085. https://doi.org/10.1016/j.neuron.2015.01.027

Roome, C. J. and B. Kuhn (2018). "Simultaneous dendritic voltage and calcium imaging and somatic recording from Purkinje neurons in awake mice." Nature Communications 9(1): 3388. https://doi.org/10.1038/s41467-018-05900-3

Rossi, L. F., K. D. Harris, et al. (2020). "Spatial connectivity matches direction selectivity in visual cortex." Nature 588(7839): 648-652. https://doi.org/10.1038/s41586-020-2894-4

Roth, M. M., J. C. Dahmen, et al. (2016). "Thalamic nuclei convey diverse contextual information to layer 1 of visual cortex." Nature Neuroscience 19(2): 299-307. https://doi.org/10.1038/nn.4197

Roth, R. H., R. H. Cudmore, et al. (2020). "Cortical Synaptic AMPA Receptor Plasticity during Motor Learning." Neuron 105(5): 895-908.e895. https://doi.org/10.1016/j.neuron.2019.12.005

Rübel, O., A. Tritt, et al. (2022). "The Neurodata Without Borders ecosystem for neurophysiological data science." eLife 11: e78362. https://doi.org/10.7554/eLife.78362

Rumyantsev, O. I., J. A. Lecoq, et al. (2020). "Fundamental bounds on the fidelity of sensory cortical coding." Nature 580(7801): 100-105. https://doi.org/10.1038/s41586-020-2130-2

Rupprecht, P., S. Carta, et al. (2021). "A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging." Nature Neuroscience 24(9): 1324-1337. https://doi.org/10.1038/s41593-021-00895-5

Saleem, A. B., E. M. Diamanti, et al. (2018). "Coherent encoding of subjective spatial position in visual cortex and hippocampus." Nature 562(7725): 124-127. https://doi.org/10.1038/s41586-018-0516-1

Schneider-Mizell, C. M., A. L. Bodor, et al. (2021). "Structure and function of axo-axonic inhibition." eLife 10: e73783. https://doi.org/10.7554/eLife.73783

Scholl, B., C. I. Thomas, et al. (2021). "Cortical response selectivity derives from strength in numbers of synapses." Nature 590(7844): 111-114. https://doi.org/10.1038/s41586-020-03044-3

Scholl, B., D. E. Wilson, et al. (2017). "Local Order within Global Disorder: Synaptic Architecture of Visual Space." Neuron 96(5): 1127-1138.e1124. https://doi.org/10.1016/j.neuron.2017.10.017

Schröder, S., N. A. Steinmetz, et al. (2020). "Arousal Modulates Retinal Output." Neuron 107(3): 487-495.e489. https://doi.org/10.1016/j.neuron.2020.04.026

Seelig, J. D., M. E. Chiappe, et al. (2010). "Two-photon calcium imaging from head-fixed Drosophila during optomotor walking behavior." Nature Methods 7(7): 535-540. https://doi.org/10.1038/nmeth.1468

Seelig, J. D. and V. Jayaraman (2013). "Feature detection and orientation tuning in the Drosophila central complex." Nature 503(7475): 262-266. https://doi.org/10.1038/nature12601

Seelig, J. D. and V. Jayaraman (2015). "Neural dynamics for landmark orientation and angular path integration." Nature 521(7551): 186-191. https://doi.org/10.1038/nature14446

Shao, L.-X., C. Liao, et al. (2021). "Psilocybin induces rapid and persistent growth of dendritic spines in frontal cortex in vivo." Neuron 109(16): 2535-2544.e2534. https://doi.org/10.1016/j.neuron.2021.06.008

Sheffield, M. E. J., M. D. Adoff, et al. (2017). "Increased Prevalence of Calcium Transients across the Dendritic Arbor during Place Field Formation." Neuron 96(2): 490-504.e495. https://doi.org/10.1016/j.neuron.2017.09.029

Sheffield, M. E. J. and D. A. Dombeck (2015). "Calcium transient prevalence across the dendritic arbour predicts place field properties." Nature 517(7533): 200-204. https://doi.org/10.1038/nature13871

Shibata, A. C. E., H. H. Ueda, et al. (2021). "Photoactivatable CaMKII induces synaptic plasticity in single synapses." Nature Communications 12(1): 751. https://doi.org/10.1038/s41467-021-21025-6

Singh, A. P., P. Wu, et al. (2022). "Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation." Cell Reports 38(12). https://doi.org/10.1016/j.celrep.2022.110543

Sjöström, P. J. and M. Häusser (2006). "A cooperative switch determines the sign of synaptic plasticity in distal dendrites of neocortical pyramidal neurons." Neuron 51(2): 227-238. https://doi.org/10.1016/j.neuron.2006.06.017

Smith, S. L., I. T. Smith, et al. (2013). "Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo." Nature 503(7474): 115-120. https://doi.org/10.1038/nature12600

Srinivasan, R., B. S. Huang, et al. (2015). "Ca2+ signaling in astrocytes from Ip3r2−/− mice in brain slices and during startle responses in vivo." Nature Neuroscience 18(5): 708-717. https://doi.org/10.1038/nn.4001

Stringer, C., M. Michaelos, et al. (2021). "High-precision coding in visual cortex." Cell 184(10): 2767-2778.e2715. https://doi.org/10.1016/j.cell.2021.03.042

Stringer, C., M. Pachitariu, et al. (2019). "High-dimensional geometry of population responses in visual cortex." Nature 571(7765): 361-365. https://doi.org/10.1038/s41586-019-1346-5

Suter, B., T. O'Connor, et al. (2010). "Ephus: Multipurpose Data Acquisition Software for Neuroscience Experiments." Frontiers in Neural Circuits 4. https://doi.org/10.3389/fncir.2010.00100

Svoboda, K. and R. Yasuda (2006). "Principles of Two-Photon Excitation Microscopy and Its Applications to Neuroscience." Neuron 50(6): 823-839. https://doi.org/10.1016/j.neuron.2006.05.019

Tada, M., A. Takeuchi, et al. (2014). "A highly sensitive fluorescent indicator dye for calcium imaging of neural activity in vitro and in vivo." European Journal of Neuroscience 39(11): 1720-1728. https://doi.org/10.1111/ejn.12476

Taisz, I., E. Donà, et al. (2023). "Generating parallel representations of position and identity in the olfactory system." Cell 186(12): 2556-2573.e2522. https://doi.org/10.1016/j.cell.2023.04.038

Tamara, S.-H., I. N. María, et al. (2015). "Channel-Mediated Lactate Release by K+/-Stimulated Astrocytes." The Journal of Neuroscience 35(10): 4168. https://doi.org/10.1523/JNEUROSCI.5036-14.2015

Tanaka, R. and D. A. Clark (2022). "Neural mechanisms to exploit positional geometry for collision avoidance." Current Biology 32(11): 2357-2374.e2356. https://doi.org/10.1016/j.cub.2022.04.023

Thiele, Tod R., Joseph C. Donovan, et al. (2014). "Descending Control of Swim Posture by a Midbrain Nucleus in Zebrafish." Neuron 83(3): 679-691. https://doi.org/10.1016/j.neuron.2014.04.018

Tritsch, N. X., J. B. Ding, et al. (2012). "Dopaminergic neurons inhibit striatal output through non-canonical release of GABA." Nature 490(7419): 262-266. https://doi.org/10.1038/nature11466

Tritsch, N. X., W.-J. Oh, et al. (2014). "Midbrain dopamine neurons sustain inhibitory transmission using plasma membrane uptake of GABA, not synthesis." eLife 3: e01936. https://doi.org/10.7554/eLife.01936

Truong, T. V., W. Supatto, et al. (2011). "Deep and fast live imaging with two-photon scanned light-sheet microscopy." Nature Methods 8(9): 757-760. https://doi.org/10.1038/nmeth.1652

Vigot, R., S. Barbieri, et al. (2006). "Differential Compartmentalization and Distinct Functions of GABAB Receptor Variants." Neuron 50(4): 589-601. https://doi.org/10.1016/j.neuron.2006.04.014

Voitov, I. and T. D. Mrsic-Flogel (2022). "Cortical feedback loops bind distributed representations of working memory." Nature 608(7922): 381-389. https://doi.org/10.1038/s41586-022-05014-3

Wagner, M. J., T. H. Kim, et al. (2017). "Cerebellar granule cells encode the expectation of reward." Nature 544(7648): 96-100. https://doi.org/10.1038/nature21726

Walker, E. Y., F. H. Sinz, et al. (2019). "Inception loops discover what excites neurons most using deep predictive models." Nature Neuroscience 22(12): 2060-2065. https://doi.org/10.1038/s41593-019-0517-x

Wallace, M. L., A. Saunders, et al. (2017). "Genetically Distinct Parallel Pathways in the Entopeduncular Nucleus for Limbic and Sensorimotor Output of the Basal Ganglia." Neuron 94(1): 138-152.e135. https://doi.org/10.1016/j.neuron.2017.03.017

Wanner, A. A. and R. W. Friedrich (2020). "Whitening of odor representations by the wiring diagram of the olfactory bulb." Nature Neuroscience 23(3): 433-442. https://doi.org/10.1038/s41593-019-0576-z

Weber, Stephanie C. and Clifford P. Brangwynne (2015). "Inverse Size Scaling of the Nucleolus by a Concentration-Dependent Phase Transition." Current Biology 25(5): 641-646. https://doi.org/10.1016/j.cub.2015.01.012

Wekselblatt, J. B., E. D. Flister, et al. (2016). "Large-scale imaging of cortical dynamics during sensory perception and behavior." Journal of Neurophysiology 115(6): 2852-2866. https://journals.physiology.org/doi/full/10.1152/jn.01056.2015%40apsselect.2016.3.issue-4

Wiegert, J. S. and T. G. Oertner (2013). "Long-term depression triggers the selective elimination of weakly integrated synapses." Proceedings of the National Academy of Sciences 110(47): E4510-E4519. https://doi.org/10.1073/pnas.1315926110

Wilson, D. E., B. Scholl, et al. (2018). "Differential tuning of excitation and inhibition shapes direction selectivity in ferret visual cortex." Nature 560(7716): 97-101. https://doi.org/10.1038/s41586-018-0354-1

Wilson, D. E., D. E. Whitney, et al. (2016). "Orientation selectivity and the functional clustering of synaptic inputs in primary visual cortex." Nature Neuroscience 19(8): 1003-1009. https://doi.org/10.1038/nn.4323

Winnubst, J., Juliette E. Cheyne, et al. (2015). "Spontaneous Activity Drives Local Synaptic Plasticity In Vivo." Neuron 87(2): 399-410. https://doi.org/10.1016/j.neuron.2015.06.029

Wright, J. A., T. Richards, et al. (2014). "The role of iron in the skin and cutaneous wound healing." Frontiers in Pharmacology 5. https://doi.org/10.3389/fphar.2014.00156

Wu, M., S. Minkowicz, et al. (2021). "Ketamine Rapidly Enhances Glutamate-Evoked Dendritic Spinogenesis in Medial Prefrontal Cortex Through Dopaminergic Mechanisms." Biological Psychiatry 89(11): 1096-1105. https://doi.org/10.1016/j.biopsych.2020.12.022

Wu, M., S. Minkowicz, et al. (2021). "Attenuated dopamine signaling after aversive learning is restored by ketamine to rescue escape actions." eLife 10: e64041. https://doi.org/10.7554/eLife.64041

Xiao, L., M. F. Priest, et al. (2017). "Biased Oxytocinergic Modulation of Midbrain Dopamine Systems." Neuron 95(2): 368-384.e365. https://doi.org/10.1016/j.neuron.2017.06.003

Xu, N.-l., M. T. Harnett, et al. (2012). "Nonlinear dendritic integration of sensory and motor input during an active sensing task." Nature 492(7428): 247-251. https://doi.org/10.1038/nature11601

Xue, M., B. V. Atallah, et al. (2014). "Equalizing excitation–inhibition ratios across visual cortical neurons." Nature 511(7511): 596-600. https://doi.org/10.1038/nature13321

Yang, W., J.-eun K. Miller, et al. (2016). "Simultaneous Multi-plane Imaging of Neural Circuits." Neuron 89(2): 269-284. https://doi.org/10.1016/j.neuron.2015.12.012

Yao, J., B. Sun, et al. (2020). "Limiting RyR2 Open Time Prevents Alzheimer's Disease-Related Neuronal Hyperactivity and Memory Loss but Not 2-Amyloid Accumulation." Cell Reports 32(12). https://doi.org/10.1016/j.celrep.2020.108169

Yasuda, R., C. D. Harvey, et al. (2006). "Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging." Nature Neuroscience 9(2): 283-291. https://doi.org/10.1038/nn1635

Yasuda, R., E. A. Nimchinsky, et al. (2004). "Imaging Calcium Concentration Dynamics in Small Neuronal Compartments." Science's STKE 2004(219): pl5-pl5. https://www.science.org/doi/abs/10.1126/stke.2192004pl5

Yasuda, R., B. L. Sabatini, et al. (2003). "Plasticity of calcium channels in dendritic spines." Nature Neuroscience 6(9): 948-955. https://doi.org/10.1038/nn1112

Zhang, Y., R. H. Cudmore, et al. (2015). "Visualization of NMDA receptor–dependent AMPA receptor synaptic plasticity in vivo." Nature Neuroscience 18(3): 402-407. https://doi.org/10.1038/nn.3936

Zhong, L., Y. Zhang, et al. (2019). "Causal contributions of parietal cortex to perceptual decision-making during stimulus categorization." Nature Neuroscience 22(6): 963-973. https://doi.org/10.1038/s41593-019-0383-6

Zito, K., V. Scheuss, et al. (2009). "Rapid Functional Maturation of Nascent Dendritic Spines." Neuron 61(2): 247-258. https://doi.org/10.1016/j.neuron.2008.10.054

Zuend, M., A. S. Saab, et al. (2020). "Arousal-induced cortical activity triggers lactate release from astrocytes." Nature Metabolism 2(2): 179-191. https://doi.org/10.1038/s42255-020-0170-4

(2010). "HER-2 Expression Correlates with Survivin in Primary Invasive Ductal Breast Cancers." Asian Pacific Journal of Cancer Prevention 11(5): 1201-1204. https://journal.waocp.org/article_25349.html

(2013). "Up-Expression and of SPARC in db/db mice kidney." Basic & Clinical Medicine 33(9): 1097-1100. http://journal11.magtechjournal.com/Jwk_jcyxylc/EN/

Acker, C. D. and L. M. Loew (2013). Characterization of Voltage-Sensitive Dyes in Living Cells Using Two-Photon Excitation. Chemical Neurobiology: Methods and Protocols. M. R. Banghart. Totowa, NJ, Humana Press: 147-160. https://link.springer.com/protocol/10.1007/978-1-62703-345-9_11

Adi, S., F. Nairouz, et al. (2014). Two-photon in vivo imaging of retinal microstructures. Proc.SPIE. https://doi.org/10.1117/12.2039375

Agarwal, C., Y. Sharma, et al. (2000). "A Polyphenolic Fraction from Grape Seeds Causes Irreversible Growth Inhibition of Breast Carcinoma MDA-MB468 Cells by Inhibiting Mitogen-activated Protein Kinases Activation and Inducing G1 Arrest and Differentiation1." Clinical Cancer Research 6(7): 2921-2930. https://aacrjournals.org/clincancerres/article/6/7/2921/288242/A-Polyphenolic-Fraction-from-Grape-Seeds-Causes

Ailin, W., W. Zhonghai, et al. (2020). Study of the sarcomeric addition process in a tissue-like cell construct under mechanical overload via TPEF-SHG imaging system. Proc.SPIE. https://doi.org/10.1117/12.2546280

Alex, C. T. K., R. Andrew, et al. (2009). Label-free imaging of arterial tissues using photonic crystal fiber (PCF) based nonlinear optical microscopic system. Proc.SPIE. 718204 (2009) https://doi.org/10.1117/12.809361

Alex, C. T. K., R. Andrew, et al. (2010). "Multimodal nonlinear optical imaging of atherosclerotic plaque development in myocardial infarction-prone rabbits." Journal of Biomedical Optics 15(2): 020501. https://doi.org/10.1117/1.3353960

Alex, C. T. K., B. M.-G. Leila, et al. (2011). Using multimodal femtosecond CARS imaging to determine plaque burden in luminal atherosclerosis. Proc.SPIE. https://doi.org/10.1117/12.873867

Allemann, N., W. Chamon, et al. (1993). "High-Frequency Ultrasound Quantitative Analyses of Corneal Scarring Following Excimer Laser Keratectomy." Archives of Ophthalmology 111(7): 968-973. https://jamanetwork.com/journals/jamaophthalmology/article-abstract/640296

Alonso, I., I. Scheer, et al. (2023). "Peripersonal encoding of forelimb proprioception in the mouse somatosensory cortex." Nature Communications 14(1): 1866. https://doi.org/10.1038/s41467-023-37575-w

Amaya, M., K. Sahana, et al. (2015). "Layer 4 Pyramidal Neurons Exhibit Robust Dendritic Spine Plasticity &lt;em&gt;In Vivo&lt;/em&gt; after Input Deprivation." The Journal of Neuroscience 35(18): 7287. https://doi.org/10.1523/JNEUROSCI.5215-14.2015

Ana, F. O. and Y. Ryohei (2014). "Neurofibromin Is the Major Ras Inactivator in Dendritic Spines." The Journal of Neuroscience 34(3): 776. https://doi.org/10.1523/JNEUROSCI.3096-13.2014

Andrásfalvy, B. K., G. L. Galiñanes, et al. (2014). "Quantum dot–based multiphoton fluorescent pipettes for targeted neuronal electrophysiology." Nature Methods 11(12): 1237-1241. https://doi.org/10.1038/nmeth.3146

Åsa, G., H. Niklaus, et al. (2008). "Spine Neck Plasticity Controls Postsynaptic Calcium Signals through Electrical Compartmentalization." The Journal of Neuroscience 28(50): 13457. https://doi.org/10.1523/JNEUROSCI.2702-08.2008

Au - Chia, T. H. and M. J. Au - Levene (2009). "In vivo Imaging of Deep Cortical Layers using a Microprism." JoVE(30): e1509. https://www.jove.com/t/1509/in-vivo-imaging-of-deep-cortical-layers-using-a-microprism

Au - Espinoza, R., B. Au - Wong, et al. (2022). "Real-Time, Two-Color Stimulated Raman Scattering Imaging of Mouse Brain for Tissue Diagnosis." JoVE(180): e63484. https://www.jove.com/t/63484/real-time-two-color-stimulated-raman-scattering-imaging-mouse-brain

Au - Gatesman Ammer, A., K. E. Au - Hayes, et al. (2011). "Multi-photon Imaging of Tumor Cell Invasion in an Orthotopic Mouse Model of Oral Squamous Cell Carcinoma." JoVE(53): e2941. https://europepmc.org/article/PMC/3196194

Au - O'Brien, G. S., S. Au - Rieger, et al. (2009). "Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos." JoVE(24): e1129. https://pubmed.ncbi.nlm.nih.gov/19229185/

Au - Parra, S. G., S. S. Au - Vesuna, et al. (2012). "Multiphoton Microscopy of Cleared Mouse Brain Expressing YFP." JoVE(67): e3848. https://pubmed.ncbi.nlm.nih.gov/23023035/

Avital-Cohen, N., R. Heiblum, et al. (2011). "The effect of active immunization against vasoactive intestinal peptide and inhibin on reproductive performance of young White Leghorn roosters." Poultry Science 90(10): 2321-2331. https://pubmed.ncbi.nlm.nih.gov/22184441/

Ayrault, O., L. Andrique, et al. (2006). "Human tumor suppressor p14ARF negatively regulates rRNA transcription and inhibits UBF1 transcription factor phosphorylation." Oncogene 25(58): 7577-7586. https://doi.org/10.1038/sj.onc.1209743

Bach, E. and D. T. Holmes (2015). "Reqscan: An open source solution for laboratory requisition scanning, archiving and retrieval." Journal of Pathology Informatics 6(1): 3. https://doi.org/10.4103/2153-3539.150256

Bachert, B. A., S. J. Choi, et al. (2016). "Unique Footprint in the scl1.3 Locus Affects Adhesion and Biofilm Formation of the Invasive M3-Type Group A Streptococcus." Frontiers in Cellular and Infection Microbiology 6. https://doi.org/10.3389/fcimb.2016.00090

Balena, A., M. Bianco, et al. (2020). "Two-photon fluorescence-assisted laser ablation of non-planar metal surfaces: fabrication of optical apertures on tapered fibers for optical neural interfaces." Optics Express 28(15): 21368-21381. https://doi.org/10.1364/OE.395187

Banghart, M. R., X. J. He, et al. (2018). "A Caged Enkephalin Optimized for Simultaneously Probing Mu and Delta Opioid Receptors." ACS Chemical Neuroscience 9(4): 684-690. https://doi.org/10.1021/acschemneuro.7b00485

Bares, A. J., M. A. Mejooli, et al. (2020). "Hyperspectral multiphoton microscopy for in vivo visualization of multiple, spectrally overlapped fluorescent labels." Optica 7(11): 1587-1601. https://doi.org/10.1364/OPTICA.389982

Barker, A. J., T. O. Helmbrecht, et al. (2021). "Functional, molecular and morphological heterogeneity of superficial interneurons in the larval zebrafish tectum." Journal of Comparative Neurology 529(9): 2159-2175. https://doi.org/10.1002/cne.25082

Bar-Noam, A. S., N. Farah, et al. (2016). "Correction-free remotely scanned two-photon in vivo mouse retinal imaging." Light: Science & Applications 5(1): e16007-e16007. https://doi.org/10.1038/lsa.2016.7

Barrett, M. J. P., K. D. Ferrari, et al. (2018). "CHIPS: an Extensible Toolbox for Cellular and Hemodynamic Two-Photon Image Analysis." Neuroinformatics 16(1): 145-147. https://doi.org/10.1007/s12021-017-9344-y

Barson, D., A. S. Hamodi, et al. (2020). "Simultaneous mesoscopic and two-photon imaging of neuronal activity in cortical circuits." Nature Methods 17(1): 107-113. https://doi.org/10.1038/s41592-019-0625-2

Beaulieu, D. R., I. G. Davison, et al. (2020). "Simultaneous multiplane imaging with reverberation two-photon microscopy." Nature Methods 17(3): 283-286. https://doi.org/10.1038/s41592-019-0728-9

Bégin, S., B. Burgoyne, et al. (2011). "Coherent anti-Stokes Raman scattering hyperspectral tissue imaging with a wavelength-swept system." Biomedical Optics Express 2(5): 1296-1306. https://doi.org/10.1364/BOE.2.001296

Ben, J., P. Pawel, et al. (2022). "The Impact of Multivesicular Release on the Transmission of Sensory Information by Ribbon Synapses." The Journal of Neuroscience 42(50): 9401. https://doi.org/10.1523/JNEUROSCI.0717-22.2022

Berigan, B. R., J. Wang, et al. (2023). "Imaging neuro-urodynamics of mouse major pelvic ganglion with a micro-endoscopic approach." Journal of Neurophysiology 129(2): 479-493. https://doi.org/10.1152/jn.00450.2022

Bernier, L.-P., E. M. York, et al. (2020). "Microglial metabolic flexibility supports immune surveillance of the brain parenchyma." Nature Communications 11(1): 1559. https://doi.org/10.1038/s41467-020-15267-z

Bhatia, N., C. Agarwal, et al. (2001). "Differential Responses of Skin Cancer-Chemopreventive Agents Silibinin, Quercetin, and Epigallocatechin 3-Gallate on Mitogenic Signaling and Cell Cycle Regulators in Human Epidermoid Carcinoma A431 Cells." Nutrition and Cancer 39(2): 292-299. https://doi.org/10.1207/S15327914nc392_20

Bhatia, N. and R. Agarwal (2001). "Detrimental effect of cancer preventive phytochemicals silymarin, genistein and epigallocatechin 3-gallate on epigenetic events in human prostate carcinoma DU145 cells." The Prostate 46(2): 98-107. https://doi.org/10.1002/1097-0045(20010201)46:2<98::AID-PROS1013>3.0.CO;2-K

Bianco, M., M. Pisanello, et al. (2022). "Orthogonalization of far-field detection in tapered optical fibers for depth-selective fiber photometry in brain tissue." APL Photonics 7(2). https://doi.org/10.1063/5.0073594

Biermann, B., S. Sokoll, et al. (2014). "Imaging of molecular surface dynamics in brain slices using single-particle tracking." Nature Communications 5(1): 3024. https://doi.org/10.1038/ncomms4024

Bigelow, A. W., C. R. Geard, et al. (2008). "Microbeam-integrated multiphoton imaging system." Review of Scientific Instruments 79(12). https://doi.org/10.1063/1.3043439

Bill, H. M., B. Knudsen, et al. (2004). "Epidermal Growth Factor Receptor-Dependent Regulation of Integrin-Mediated Signaling and Cell Cycle Entry in Epithelial Cells." Molecular and Cellular Biology 24(19): 8586-8599. https://doi.org/10.1128/MCB.24.19.8586-8599.2004

Bimbard, C., T. P. H. Sit, et al. (2023). "Behavioral origin of sound-evoked activity in mouse visual cortex." Nature Neuroscience 26(2): 251-258. https://doi.org/10.1038/s41593-022-01227-x

Birbach, A., J. M. Verkuyl, et al. (2006). "Reversible, activity-dependent targeting of profilin to neuronal nuclei." Experimental Cell Research 312(12): 2279-2287. https://doi.org/10.1016/j.yexcr.2006.03.026

Bjørnstad, D. M., K. S. Åbjørsbråten, et al. (2021). "Begonia—A Two-Photon Imaging Analysis Pipeline for Astrocytic Ca2+ Signals." Frontiers in Cellular Neuroscience 15. https://doi.org/10.3389/fncel.2021.681066

Blumhagen, F., P. Zhu, et al. (2011). "Neuronal filtering of multiplexed odour representations." Nature 479(7374): 493-498. https://doi.org/10.1038/nature10633

Borghuis, B. G. (2019). Two-Photon Fluorescence Imaging of Visually Evoked Glutamate Release Using iGluSnFR in the Mouse Visual System. Multiphoton Microscopy. E. Hartveit. New York, NY, Springer New York: 87-109. https://doi.org/10.1007/978-1-4939-9702-2_5

Borghuis, B. G., J. S. Marvin, et al. (2013). "Two-Photon Imaging of Nonlinear Glutamate Release Dynamics at Bipolar Cell Synapses in the Mouse Retina." The Journal of Neuroscience 33(27): 10972-10985. https://doi.org/10.1523/JNEUROSCI.1241-13.2013

Bos, R., C. Gainer, et al. (2016). "Role for Visual Experience in the Development of Direction-Selective Circuits." Current Biology 26(10): 1367-1375. https://doi.org/10.1016/j.cub.2016.03.073

Bozkurt, B., S. B. Kribbs, et al. (1998). "Pathophysiologically Relevant Concentrations of Tumor Necrosis Factor-α Promote Progressive Left Ventricular Dysfunction and Remodeling in Rats." Circulation 97(14): 1382-1391. https://doi.org/10.1161/01.CIR.97.14.1382

Brünig, I., S. Kaech, et al. (2004). "Influx of extracellular calcium regulates actin-dependent morphological plasticity in dendritic spines." Neuropharmacology 47(5): 669-676. https://doi.org/10.1016/j.neuropharm.2004.07.038

Brymer, K. J., E. P. Hurley, et al. (2023). "Asymmetric dysregulation of glutamate dynamics across the synaptic cleft in a mouse model of Alzheimer’s disease." Acta Neuropathologica Communications 11(1): 27. https://doi.org/10.1186/s40478-023-01524-x

Buchanan, K. A., A. V. Blackman, et al. (2012). "Target-specific expression of presynaptic NMDA receptors in neocortical microcircuits." Neuron 75(3): 451-466. https://doi.org/10.1016/j.neuron.2012.06.017

Calle, E. A., S. Vesuna, et al. (2013). "The Use of Optical Clearing and Multiphoton Microscopy for Investigation of Three-Dimensional Tissue-Engineered Constructs." Tissue Engineering Part C: Methods 20(7): 570-577. https://doi.org/10.1089/ten.tec.2013.0538

Campagnola, L., M. Kratz, et al. (2014). "ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research." Frontiers in Neuroinformatics 8. https://doi.org/10.3389/fninf.2014.00003

Campbell, R. A. A., R. W. Eifert, et al. (2014). "Openstage: A Low-Cost Motorized Microscope Stage with Sub-Micron Positioning Accuracy." PLOS ONE 9(2): e88977. https://doi.org/10.1371/journal.pone.0088977

Candelier, R., M. Sriti Murmu, et al. (2015). "A microfluidic device to study neuronal and motor responses to acute chemical stimuli in zebrafish." Scientific Reports 5(1): 12196. https://doi.org/10.1038/srep12196

Capek, E., T. L. Ribeiro, et al. (2023). "Parabolic avalanche scaling in the synchronization of cortical cell assemblies." Nature Communications 14(1): 2555. https://doi.org/10.1038/s41467-023-37976-x

Cartarozzi, L. P., P. Rieder, et al. (2018). "In vivo two-photon imaging of motoneurons and adjacent glia in the ventral spinal cord." Journal of Neuroscience Methods 299: 8-15. https://doi.org/10.1016/j.jneumeth.2018.01.005

Case, S. L., R.-L. Lin, et al. (2023). "Age- and sex-dependent alterations in primary somatosensory cortex neuronal calcium network dynamics during locomotion." Aging Cell 22(8): e13898. https://doi.org/10.1111/acel.13898

Cassini, M. F., V. R. Kakade, et al. (2018). "Mcp1 Promotes Macrophage-Dependent Cyst Expansion in Autosomal Dominant Polycystic Kidney Disease." J Am Soc Nephrol 29(10): 2471-2481. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6171277/

Cătălin, B., S. Mitran, et al. (2013). "Comparative aspects of microglia reaction in white and gray matter." Curr Health Sci J 39(3): 151-154. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3945282/

Cezar, M. T., E. L. C. Sophie, et al. (2018). "Convergent Metabotropic Signaling Pathways Inhibit SK Channels to Promote Synaptic Plasticity in the Hippocampus." The Journal of Neuroscience 38(43): 9252. https://doi.org/10.1523/JNEUROSCI.1160-18.2018

Chaigneau, E., E. Ronzitti, et al. (2016). "Two-Photon Holographic Stimulation of ReaChR." Frontiers in Cellular Neuroscience 10. https://doi.org/10.3389/fncel.2016.00234

Chan, S., M. Brophy, et al. (2019). "Aspirin treatment does not increase microhemorrhage size in young or aged mice." PLOS ONE 14(1): e0204295. https://doi.org/10.1371/journal.pone.0204295

Chen, B., T. Chakraborty, et al. (2020). "Extended depth of focus multiphoton microscopy via incoherent pulse splitting." Biomedical Optics Express 11(7): 3830-3842. https://doi.org/10.1364/BOE.393931

Chen, P. T. (2019). Characterize the noise in PMT based optical imaging system. 2019 International Conference on Information Technology and Computer Application (ITCA). https://ieeexplore.ieee.org/abstract/document/9092459/figures#figures

Chen, S., X. Feng, et al. (2010). "Software controlling algorithms for the system performance optimization of confocal laser scanning microscope." Biomedical Signal Processing and Control 5(3): 223-228. https://doi.org/10.1016/j.bspc.2010.03.002

Chen, Y., Z. Liu, et al. (2023). "Imaging Low-Temperature Phases of Ice with Polarization-Resolved Hyperspectral Stimulated Raman Scattering Microscopy." The Journal of Physical Chemistry B 127(11): 2609-2616. https://doi.org/10.1021/acs.jpcb.2c09068

Chen, Y., J. Saulnier, et al. (2014). "A PKA activity sensor for quantitative analysis of endogenous GPCR signaling via 2-photon FRET-FLIM imaging." Frontiers in Pharmacology 5. https://doi.org/10.3389/fphar.2014.00056

Cheng, H., S. Tong, et al. (2019). "Deep-brain 2-photon fluorescence microscopy in vivo excited at the1700  nm window." Optics Letters 44(17): 4432-4435. https://doi.org/10.1364/OL.44.004432

Cheng, J., Q. Li, et al. (2011). "Effects of Huangqi Maxingshigan decoction on infectious laryngotracheitis in chickens." Italian Journal of Animal Science 10(2): e24. https://doi.org/10.4081/ijas.2011.e24

Cheng, Z., H. Jiang, et al. (2020). "Pupil plane actuated remote focusing for rapid focal depth control." Optics Express 28(18): 26407-26413. https://doi.org/10.1364/OE.402787

Chengqi, Z., L. Chunsheng, et al. (2002). An agent-based framework for petroleum information services from distributed heterogeneous data resources. Ninth Asia-Pacific Software Engineering Conference, 2002. https://ieeexplore.ieee.org/abstract/document/1183095

Chenting, L., C. Matteo, et al. (2023). "Design and test of a rigid endomicroscopic system for multimodal imaging and femtosecond laser ablation." Journal of Biomedical Optics 28(6): 066004. https://doi.org/10.1117/1.JBO.28.6.066004

Chéreau, R., T. Bawa, et al. (2020). "Dynamic perceptual feature selectivity in primary somatosensory cortex upon reversal learning." Nature Communications 11(1): 3245. https://doi.org/10.1038/s41467-020-17005-x

Chettih, S. N. and C. D. Harvey (2019). "Single-neuron perturbations reveal feature-specific competition in V1." Nature 567(7748): 334-340. https://doi.org/10.1038/s41586-019-0997-6

Chia, T. H., A. Williamson, et al. (2007). Multiphoton Fluorescence Imaging of NADH to Investigate Metabolic Changes in Human Epileptic Tissue in vitro. 2007 Conference on Lasers and Electro-Optics (CLEO). https://ieeexplore.ieee.org/abstract/document/4453056

Chiu, D. N. (2014). Investigation of three aspects of glutamate physiology. https://www.semanticscholar.org/paper/Investigation-of-three-aspects-of-glutamate-Chiu/0eb3e31c63e93f07f9269dfa7eb8fe05f1de34e0

Chong, E. Z., M. Panniello, et al. (2019). "Quasi-simultaneous multiplane calcium imaging of neuronal circuits." Biomedical Optics Express 10(1): 267-282. https://doi.org/10.1364/BOE.10.000267

Chow, B. W., V. Nuñez, et al. (2020). "Caveolae in CNS arterioles mediate neurovascular coupling." Nature 579(7797): 106-110. https://doi.org/10.1038/s41586-020-2026-1

Chow, D. M., D. Sinefeld, et al. (2020). "Deep three-photon imaging of the brain in intact adult zebrafish." Nature Methods 17(6): 605-608. https://doi.org/10.1038/s41592-020-0819-7

Chowdhury, T., J. Jimenez, et al. (2010). "Fate of Cajal-Retzius neurons in the postnatal mouse neocortex." Frontiers in Neuroanatomy 4. https://doi.org/10.3389/neuro.05.010.2010

Christie, J. M., D. N. Chiu, et al. (2011). "Ca2+-dependent enhancement of release by subthreshold somatic depolarization." Nature Neuroscience 14(1): 62-68. https://doi.org/10.1038/nn.2718

Corey, M. W., T. Joshua, et al. (2020). "The Impact of Steroid Activation of TRPM3 on Spontaneous Activity in the Developing Retina." eneuro 7(2): ENEURO.0175-0119.2020. https://doi.org/10.1523/ENEURO.0175-19.2020

Cossell, L., M. F. Iacaruso, et al. (2015). "Functional organization of excitatory synaptic strength in primary visual cortex." Nature 518(7539): 399-403. https://doi.org/10.1038/nature14182

Cox, J., L. Pinto, et al. (2016). "Calcium imaging of sleep–wake related neuronal activity in the dorsal pons." Nature Communications 7(1): 10763. https://doi.org/10.1038/ncomms10763

Crowe, S. E. and G. C. R. Ellis-Davies (2014). "Longitudinal in vivo two-photon fluorescence imaging." Journal of Comparative Neurology 522(8): 1708-1727. https://doi.org/10.1002/cne.23502

Cruz-Martín, A., M. Crespo, et al. (2012). "Glutamate Induces the Elongation of Early Dendritic Protrusions via mGluRs in Wild Type Mice, but Not in Fragile X Mice." PLOS ONE 7(2): e32446. https://doi.org/10.1371/journal.pone.0032446

Cruz-Martin, A. and C. Portera-Cailliau (2014). "In vivo imaging of axonal and dendritic structures in neonatal mouse cortex." Cold Spring Harb Protoc 1(1): 57-64. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9809208/

Cullen, M. R. and W. W. Merrill (1992). "Association between Neutrophil Concentration in Bronchoalveolar Lavage Fluid and Recent Losses in Diffusing Capacity in Men Formerly Exposed to Asbestos." CHEST 102(3): 682-687. https://doi.org/10.1378/chest.102.3.682

Cupido, A., B. Catalin, et al. (2014). Surgical Procedures to Study Microglial Motility in the Brain and in the Spinal Cord by In Vivo Two-Photon Laser-Scanning Microscopy. Laser Scanning Microscopy and Quantitative Image Analysis of Neuronal Tissue. L. Bakota and R. Brandt. New York, NY, Springer New York: 37-50. https://link.springer.com/protocol/10.1007/978-1-4939-0381-8_2

Daie, K., K. Svoboda, et al. (2021). "Targeted photostimulation uncovers circuit motifs supporting short-term memory." Nature Neuroscience 24(2): 259-265. https://doi.org/10.1038/s41593-020-00776-3

Dana, H., A. Marom, et al. (2014). "Hybrid multiphoton volumetric functional imaging of large-scale bioengineered neuronal networks." Nature Communications 5(1): 3997. https://doi.org/10.1038/ncomms4997

Dana, H., O. Novak, et al. (2018). "Thy1 transgenic mice expressing the red fluorescent calcium indicator jRGECO1a for neuronal population imaging in vivo." PLOS ONE 13(10): e0205444. https://doi.org/10.1371/journal.pone.0205444

Daniel, J. K., R. Davide, et al. (2018). "Combinatorial Expression of &lt;em&gt;Grp&lt;/em&gt; and &lt;em&gt;Neurod6&lt;/em&gt; Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability." eneuro 5(3): ENEURO.0152-0118.2018. https://doi.org/10.1523/ENEURO.0152-18.2018

Dehez, H., M. Piché, et al. (2013). "Resolution and contrast enhancement in laser scanning microscopy using dark beam imaging." Optics Express 21(13): 15912-15925. https://doi.org/10.1364/OE.21.015912

Demas, J., J. Manley, et al. (2021). "High-speed, cortex-wide volumetric recording of neuroactivity at cellular resolution using light beads microscopy." Nature Methods 18(9): 1103-1111. https://doi.org/10.1038/s41592-021-01239-8

Deng, X., X. Ma, et al. (2023). "In vivo deep-brain 2-photon fluorescent microscopy labeled with near-infrared dyes excited at the 1700 nm window." Analytica Chimica Acta 1255: 341118. https://doi.org/10.1016/j.aca.2023.341118

DeNiro, M., O. Alsmadi, et al. (2009). "Modulating the hypoxia-inducible factor signaling pathway as a therapeutic modality to regulate retinal angiogenesis." Experimental Eye Research 89(5): 700-717. https://doi.org/10.1016/j.exer.2009.06.013

Derong, Z. and H. Yong (2010). A new method and instrument for measurement of plant leaf area. 2010 IEEE International Conference on Intelligent Systems and Knowledge Engineering. https://ieeexplore.ieee.org/abstract/document/5680761

Dinesh Jackson Samuel, R. and B. Rajesh Kanna (2019). "A programmable microscopic stage: Design and development." Microscopy Research and Technique 82(4): 429-442. https://pubmed.ncbi.nlm.nih.gov/30575202/

Ding, J. B., K. T. Takasaki, et al. (2009). "Supraresolution imaging in brain slices using stimulated-emission depletion two-photon laser scanning microscopy." Neuron 63(4): 429-437. https://pubmed.ncbi.nlm.nih.gov/19709626/

Dong, Y., J. Li, et al. (2022). "Cortical regulation of two-stage rapid eye movement sleep." Nature Neuroscience 25(12): 1675-1682. https://doi.org/10.1038/s41593-022-01195-2

Donzis, E. J., S. M. Holley, et al. (2018). Neurophysiological Assessment of Huntington’s Disease Model Mice. Huntington’s Disease. S. V. Precious, A. E. Rosser and S. B. Dunnett. New York, NY, Springer New York: 163-177. https://pubmed.ncbi.nlm.nih.gov/29856019/

Dore, K., J. Aow, et al. (2015). "Agonist binding to the NMDA receptor drives movement of its cytoplasmic domain without ion flow." Proceedings of the National Academy of Sciences 112(47): 14705-14710. https://doi.org/10.1073/pnas.1520023112

Dore, K. and R. Malinow (2021). "Elevated PSD-95 Blocks Ion-flux Independent LTD: A Potential New Role for PSD-95 in Synaptic Plasticity." Neuroscience 456: 43-49. https://doi.org/10.1016/j.neuroscience.2020.02.020

Doronin, M., S. Makovkin, et al. (2017). "Development of Self-made LSM Software using in Neuroscience." IOP Conference Series: Materials Science and Engineering 224(1): 012057. https://iopscience.iop.org/article/10.1088/1757-899X/224/1/012057/meta

Dorostkar, M. M., E. Dreosti, et al. (2010). "Computational processing of optical measurements of neuronal and synaptic activity in networks." Journal of Neuroscience Methods 188(1): 141-150. https://doi.org/10.1016/j.jneumeth.2010.01.033

Duchemin, A., M. Privat, et al. (2022). "Fourier Motion Processing in the Optic Tectum and Pretectum of the Zebrafish Larva." Frontiers in Neural Circuits 15. https://doi.org/10.3389/fncir.2021.814128

Duffet, L., S. Kosar, et al. (2022). "A genetically encoded sensor for in vivo imaging of orexin neuropeptides." Nature Methods 19(2): 231-241. https://doi.org/10.1038/s41592-021-01390-2

Dürst, C. D. and T. G. Oertner (2022). Imaging Synaptic Glutamate Release with Two-Photon Microscopy in Organotypic Slice Cultures. Synaptic Vesicles: Methods and Protocols. J. Dahlmanns and M. Dahlmanns. New York, NY, Springer US: 205-219. https://link.springer.com/protocol/10.1007/978-1-0716-1916-2_16

Dürst, C. D., J. S. Wiegert, et al. (2022). "Vesicular release probability sets the strength of individual Schaffer collateral synapses." Nature Communications 13(1): 6126. https://doi.org/10.1038/s41467-022-33565-6

Erchova, I., A. Vasalauskaite, et al. (2017). "Enhancement of visual cortex plasticity by dark exposure." Philosophical Transactions of the Royal Society B: Biological Sciences 372(1715): 20160159. https://doi.org/10.1098/rstb.2016.0159

Erica, D. A., F. Daniel, et al. (2019). "Dendritic Spines in Early Postnatal Fragile X Mice Are Insensitive to Novel Sensory Experience." The Journal of Neuroscience 39(3): 412. https://doi.org/10.1523/JNEUROSCI.1734-18.2018

Eschbach, C., A. Fushiki, et al. (2021). "Circuits for integrating learned and innate valences in the insect brain." eLife 10: e62567. https://doi.org/10.7554/eLife.62567

Eslam, M. F. M., M.-R. Ciaran, et al. (2017). "Steady-State Free Ca&lt;sup&gt;2+&lt;/sup&gt; in Astrocytes Is Decreased by Experience and Impacts Arteriole Tone." The Journal of Neuroscience 37(34): 8150. https://doi.org/10.1523/JNEUROSCI.0239-17.2017

Ferrand, P. (2015). "GPScan.VI: A general-purpose LabVIEW program for scanning imaging or any application requiring synchronous analog voltage generation and data acquisition." Computer Physics Communications 192: 342-347. https://doi.org/10.1016/j.cpc.2015.03.010

Feruz, G., Y. Shan, et al. (2013). High-spectral resolution nonlinear microspectroscopy and imaging of soft condensed and biological media. Proc.SPIE. https://doi.org/10.1117/12.2003240

Filosa, A., A. J. Barker, et al. (2016). "Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum." Neuron 90(3): 596-608. https://doi.org/10.1016/j.neuron.2016.03.014

Fişek, M. and J. M. Jeanne (2021). Two-Photon Optogenetic Stimulation of Drosophila Neurons. Channelrhodopsin: Methods and Protocols. R. E. Dempski. New York, NY, Springer US: 97-108. https://pubmed.ncbi.nlm.nih.gov/32865741/

Fisher, Y. E., J. Lu, et al. (2019). "Sensorimotor experience remaps visual input to a heading-direction network." Nature 576(7785): 121-125. https://doi.org/10.1038/s41586-019-1772-4

Fjord-Larsen, L., J. L. Johansen, et al. (2005). "Efficient in vivo protection of nigral dopaminergic neurons by lentiviral gene transfer of a modified Neurturin construct." Experimental Neurology 195(1): 49-60. https://doi.org/10.1016/j.expneurol.2005.03.006

Flores-Valle, A., R. Honnef, et al. (2022). "Automated long-term two-photon imaging in head-fixed walking Drosophila." Journal of Neuroscience Methods 368: 109432. https://doi.org/10.1016/j.jneumeth.2021.109432

Fournel, R., M. L. Veruki, et al. (2022). "Digital reconstruction and quantitative morphometric analysis of bipolar cells in live rat retinal slices." Journal of Comparative Neurology 530(10): 1700-1728. https://doi.org/10.1002/cne.25308

Francis, A. T., T. T. Nguyen, et al. (2018). "In Situ Stimulated Raman Scattering (SRS) Microscopy Study of the Dissolution of Sustained-Release Implant Formulation." Molecular Pharmaceutics 15(12): 5793-5801. https://doi.org/10.1021/acs.molpharmaceut.8b00965

Frank, A. C., S. Huang, et al. (2018). "Hotspots of dendritic spine turnover facilitate clustered spine addition and learning and memory." Nature Communications 9(1): 422. https://doi.org/10.1038/s41467-017-02751-2

Franklin, S. C.-H., L. A. Marcos, et al. (2022). "The Retinal Basis of Light Aversion in Neonatal Mice." The Journal of Neuroscience 42(20): 4101. https://doi.org/10.1523/JNEUROSCI.0151-22.2022

Friedman, P. J., J. E. Brimm, et al. (1984). "Measuring Lung Volumes from Chest Films Using Equations Derived from Computed Tomography." Investigative Radiology 19(4). https://journals.lww.com/investigativeradiology/Abstract/1984/07000/Measuring_Lung_Volumes_from_Chest_Films_Using.5.aspx

Fueser, H., C. Pilger, et al. (2022). "Polystyrene microbeads influence lipid storage distribution in C. elegans as revealed by coherent anti-Stokes Raman scattering (CARS) microscopy." Environmental Pollution 294: 118662. https://doi.org/10.1016/j.envpol.2021.118662

Fulopova, B., W. Bennett, et al. (2022). "Cortical axon sub-population maintains density, but not turnover, of en passant boutons in the aged APP/PS1 amyloidosis model." Neurobiology of Aging 115: 29-38. https://doi.org/10.1016/j.neurobiolaging.2022.03.007

Galiñanes, G. L., C. Bonardi, et al. (2018). "Directional Reaching for Water as a Cortex-Dependent Behavioral Framework for Mice." Cell Reports 22(10): 2767-2783. https://doi.org/10.1016/j.celrep.2018.02.042

Gandhi, S. P., Y. Yanagawa, et al. (2008). "Delayed plasticity of inhibitory neurons in developing visual cortex." Proceedings of the National Academy of Sciences 105(43): 16797-16802. https://doi.org/10.1073/pnas.0806159105

Gangavarapu, T., A. Jayasimha, et al. (2020). "Predicting ICD-9 code groups with fuzzy similarity based supervised multi-label classification of unstructured clinical nursing notes." Knowledge-Based Systems 190: 105321. https://doi.org/10.1016/j.knosys.2019.105321

Ganten, P. H. (2000). Hinweise zu Anwendungen und Paketen. Debian GNU/Linux: Grundlagen, Installation, Administration und Anwendung. P. H. Ganten. Berlin, Heidelberg, Springer Berlin Heidelberg: 619-628. https://link.springer.com/chapter/10.1007/3-540-28623-3_18

Gao, G., Y. Li, et al. (2001). "Unbalanced expression of VEGF and PEDF in ischemia-induced retinal neovascularization." FEBS Letters 489(2): 270-276. https://doi.org/10.1016/S0014-5793(01)02110-X

Gao, Y., L. Liu, et al. (2020). "Adaptive optics via pupil ring segmentation improves spherical aberration correction for two-photon imaging of optically cleared tissues." Optics Express 28(23): 34935-34947. https://doi.org/10.1364/OE.408621

Garcia, H. G. and T. Gregor (2018). Live Imaging of mRNA Synthesis in Drosophila. RNA Detection: Methods and Protocols. I. Gaspar. New York, NY, Springer New York: 349-357. https://link.springer.com/protocol/10.1007/978-1-4939-7213-5_23

Garcia-Junco-Clemente, P., D. K. Chow, et al. (2013). "Overexpression of calcium-activated potassium channels underlies cortical dysfunction in a model of <i>PTEN</i>-associated autism." Proceedings of the National Academy of Sciences 110(45): 18297-18302. https://doi.org/10.1073/pnas.1309207110

Gaucher, Q., M. Panniello, et al. (2020). "Complexity of frequency receptive fields predicts tonotopic variability across species." eLife 9: e53462. https://doi.org/10.7554/eLife.53462

Gauthier, J. L., S. A. Koay, et al. (2022). "Detecting and correcting false transients in calcium imaging." Nature Methods 19(4): 470-478. https://doi.org/10.1038/s41592-022-01422-5

Gdalyahu, A., M. Lazaro, et al. (2015). "The Autism Related Protein Contactin-Associated Protein-Like 2 (CNTNAP2) Stabilizes New Spines: An In Vivo Mouse Study." PLOS ONE 10(5): e0125633. https://doi.org/10.1371/journal.pone.0125633

Gee, J. M., Nathan A. Smith, et al. (2014). "Imaging Activity in Neurons and Glia with a Polr2a-Based and Cre-Dependent GCaMP5G-IRES-tdTomato Reporter Mouse." Neuron 83(5): 1058-1072. Gee, J. M., Nathan A. Smith, et al. (2014). "Imaging Activity in Neurons and Glia with a <em>Polr2a</em>-Based and Cre-Dependent GCaMP5G-IRES-tdTomato Reporter Mouse." Neuron 83(5): 1058-1072. https://pubmed.ncbi.nlm.nih.gov/25155958/

Gelbart, M. A., B. He, et al. (2012). "Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis." Proceedings of the National Academy of Sciences 109(47): 19298-19303. https://doi.org/10.1073/pnas.1205258109

Giardina, G., A. Micko, et al. (2021) "Morpho-Molecular Metabolic Analysis and Classification of Human Pituitary Gland and Adenoma Biopsies Based on Multimodal Optical Imaging." Cancers 13 DOI: 10.3390/cancers13133234. https://doi.org/10.3390/cancers13133234

Giblin, J. T., S.-W. Park, et al. (2022). "Measuring capillary flow dynamics using interlaced two-photon volumetric scanning." Journal of Cerebral Blood Flow & Metabolism 43(4): 595-609. https://doi.org/10.1177/0271678X221145091

Gillet, S. N., H. K. Kato, et al. (2018). "Fear Learning Regulates Cortical Sensory Representations by Suppressing Habituation." Frontiers in Neural Circuits 11. https://doi.org/10.3389/fncir.2017.00112

Gonçalves, J. T., C. W. Bloyd, et al. (2016). "In vivo imaging of dendritic pruning in dentate granule cells." Nature Neuroscience 19(6): 788-791. https://doi.org/10.1038/nn.4301

Granstedt, A. E., J. B. Bosse, et al. (2013). "In vivo imaging of alphaherpesvirus infection reveals synchronized activity dependent on axonal sorting of viral proteins." Proceedings of the National Academy of Sciences 110(37): E3516-E3525. https://doi.org/10.1073/pnas.1311062110

Grienberger, C. and J. C. Magee (2022). "Entorhinal cortex directs learning-related changes in CA1 representations." Nature 611(7936): 554-562. https://doi.org/10.1038/s41586-022-05378-6

Gu, X., J. Y. Li, et al. (2015). "Influence of MiR-451 on Drug Resistances of Paclitaxel-Resistant Breast Cancer Cell Line." Med Sci Monit 21: 3291-3297. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4630958/

Guetg, N., S. A. Aziz, et al. (2010). "NMDA receptor-dependent GABA_B receptor internalization via CaMKII phosphorylation of serine 867 in GABA_B1." Proceedings of the National Academy of Sciences 107(31): 13924-13929. https://doi.org/10.1073/pnas.1000909107

Haidey, J. N. and G. R. Gordon (2021) "Direct Deviations in Astrocyte Free Ca2+ Concentration Control Multiple Arteriole Tone States." Neuroglia 2, 48-56 DOI: 10.3390/neuroglia2010006. https://doi.org/10.3390/neuroglia2010006

Ham, Y.-M. and S. J. Mahoney (2013). "Compensation of the AKT signaling by ERK signaling in transgenic mice hearts overexpressing TRIM72." Experimental Cell Research 319(10): 1451-1462. https://doi.org/10.1016/j.yexcr.2013.02.016

Hartveit, E. and M. L. Veruki (2019). Combining Multiphoton Excitation Microscopy with Fast Microiontophoresis to Investigate Neuronal Signaling. Multiphoton Microscopy. E. Hartveit. New York, NY, Springer New York: 131-159. https://link.springer.com/protocol/10.1007/978-1-4939-9702-2_7

Heider, B., J. L. Nathanson, et al. (2010). "Two-Photon Imaging of Calcium in Virally Transfected Striate Cortical Neurons of Behaving Monkey." PLOS ONE 5(11): e13829. https://doi.org/10.1371/journal.pone.0013829

Herman, M. A., B. Nahir, et al. (2011). "Distribution of Extracellular Glutamate in the Neuropil of Hippocampus." PLOS ONE 6(11): e26501. https://doi.org/10.1371/journal.pone.0026501

Hinz, C., I. Namekawa, et al. (2013). "Olfactory imprinting is triggered by MHC peptide ligands." Scientific Reports 3(1): 2800. https://doi.org/10.1038/srep02800

Hofemeier, A. D., H. Hachmeister, et al. (2016). "Label-free nonlinear optical microscopy detects early markers for osteogenic differentiation of human stem cells." Scientific Reports 6(1): 26716. https://doi.org/10.1038/srep26716

Holland-Moritz, E., J. Gordon, II, et al. (1991). "Motion of atomic steps of gold(111) films on mica." Langmuir 7(2): 301-306. https://doi.org/10.1021/la00050a017

Hoogland, T. M., B. Kuhn, et al. (2009). "Radially expanding transglial calcium waves in the intact cerebellum." Proceedings of the National Academy of Sciences 106(9): 3496-3501. https://doi.org/10.1073/pnas.0809269106

Horton, N. G., D. Kobat, et al. (2012). In Vivo, Deep Tissue Three-Photon Imaging at the 1700-nm Spectral Window. Biomedical Optics and 3-D Imaging, Miami, Florida, Optica Publishing Group. https://doi.org/10.1364/BIOMED.2012.BSu2B.2

Hou, S. S., J. Yang, et al. (2023). "Near-infrared fluorescence lifetime imaging of amyloid-β aggregates and tau fibrils through the intact skull of mice." Nature Biomedical Engineering 7(3): 270-280. https://doi.org/10.1038/s41551-023-01003-7

Houle, M.-A., R. C. Burruss, et al. (2017). "Rapid 3D chemical-specific imaging of minerals using stimulated Raman scattering microscopy." Journal of Raman Spectroscopy 48(5): 726-735. https://doi.org/10.1002/jrs.5098

Howe, M. W. and D. A. Dombeck (2016). "Rapid signalling in distinct dopaminergic axons during locomotion and reward." Nature 535(7613): 505-510. https://doi.org/10.1038/nature18942

Hsiang, J.-C., K. P. Johnson, et al. (2017). "Local processing in neurites of VGluT3-expressing amacrine cells differentially organizes visual information." eLife 6: e31307. https://doi.org/10.7554/eLife.31307

Hsu, K.-J., Y.-Y. Lin, et al. (2019). "Optical properties of adult Drosophila brains in one-, two-, and three-photon microscopy." Biomedical Optics Express 10(4): 1627-1637. https://doi.org/10.1364/BOE.10.001627

Hu, Q., P. Li, et al. (2018). "Simultaneous two-plane, two-photon imaging based on spatial multiplexing." Optics Letters 43(19): 4598-4601. https://doi.org/10.1364/OL.43.004598

Huang, A. H., J. L. Balestrini, et al. (2016). "Biaxial Stretch Improves Elastic Fiber Maturation, Collagen Arrangement, and Mechanical Properties in Engineered Arteries." Tissue Engineering Part C: Methods 22(6): 524-533. https://doi.org/10.1089/ten.tec.2015.0309

Huser, T., H. Hachmeister, et al. (2015). Label-free super-resolution optical microscopy of cellular dynamics. Asia Communications and Photonics Conference 2015, Hong Kong, Optica Publishing Group. https://doi.org/10.1364/ACPC.2015.AS3I.1

Imbriotis, V., A. Ranson, et al. (2021). "RPG: A low-cost, open-source, high-performance solution for displaying visual stimuli." Journal of Neuroscience Methods 363: 109343. https://doi.org/10.1016/j.jneumeth.2021.109343

Jackson, J., A. J. Canty, et al. (2015). "Laser-Mediated Microlesions in Mouse Neocortex to Investigate Neuronal Degeneration and Regeneration." Current Protocols in Neuroscience 73(1): 2.24.21-22.24.17. https://doi.org/10.1002/0471142301.ns0224s73

James, C. H. C., L. S. Spencer, et al. (2013). "Target-Specific Effects of Somatostatin-Expressing Interneurons on Neocortical Visual Processing." The Journal of Neuroscience 33(50): 19567. https://doi.org/10.1523/JNEUROSCI.2624-13.2013

Jefferson, S. J., I. Gregg, et al. (2023). "5-MeO-DMT modifies innate behaviors and promotes structural neural plasticity in mice." Neuropsychopharmacology 48(9): 1257-1266. https://doi.org/10.1038/s41386-023-01572-w

Jesse, W. W., S. W. Warren, et al. (2016). Real-time digital signal processing in multiphoton and time-resolved microscopy. Proc.SPIE. https://doi.org/10.1117/12.2218102

Jiang, C., T. Song, et al. (2017). "RAS Promotes Proliferation and Resistances to Apoptosis in Meningioma." Molecular Neurobiology 54(1): 779-787. https://doi.org/10.1007/s12035-016-9763-z

Jones, J. S., D. M. Small, et al. (2018). "In Vivo Calcium Imaging of Cardiomyocytes in the Beating Mouse Heart With Multiphoton Microscopy." Frontiers in Physiology 9. https://doi.org/10.3389/fphys.2018.00969

Jordan, S. (2011). "Piezoelectric Actuation Offers Light Microscopy New Capabilities." Microscopy Today 19(4): 30-36. https://doi.org/10.1017/S1551929511000460

Joseph, P., L. W. Hannah, et al. (2021). "Photoreceptive Ganglion Cells Drive Circuits for Local Inhibition in the Mouse Retina." The Journal of Neuroscience 41(7): 1489. https://doi.org/10.1523/JNEUROSCI.0674-20.2020

Judkewitz, B., M. Rizzi, et al. (2009). "Targeted single-cell electroporation of mammalian neurons in vivo." Nature Protocols 4(6): 862-869. https://doi.org/10.1038/nprot.2009.56

Kah Wai, Y., S. Philipp, et al. (2016). "Dendrites &lt;em&gt;In Vitro&lt;/em&gt; and &lt;em&gt;In Vivo&lt;/em&gt; Contain Microtubules of Opposite Polarity and Axon Formation Correlates with Uniform Plus-End-Out Microtubule Orientation." The Journal of Neuroscience 36(4): 1071. https://pubmed.ncbi.nlm.nih.gov/26818498/

Kang, S., J. Park, et al. (2022). "ICoRD: iterative correlation-based ROI detection method for the extraction of neural signals in calcium imaging." Journal of Neural Engineering 19(4): 046035. https://iopscience.iop.org/article/10.1088/1741-2552/ac84aa/meta

Kao, M.-C., A. F. Pegoraro, et al. (2018). "Direct mineralogical imaging of economic ore and rock samples with multi-modal nonlinear optical microscopy." Scientific Reports 8(1): 16917. https://doi.org/10.1038/s41598-018-34779-9

Kayvan Forouhesh, T., D. Arash, et al. (2018). Resolution enhancement of 2-photon microscopy using high-refractive index microspheres. Proc.SPIE. https://doi.org/10.1117/12.2290613

Kayvan Forouhesh, T., G. P. Emily, et al. (2018). Characterization of bone collagen organization defects in murine hypophosphatasia using a Zernike model of optical aberrations. Proc.SPIE. https://doi.org/10.1117/12.2290896

Kayvan Forouhesh, T., S. Min Kyoung, et al. (2017). Fast axial scanning for 2-photon microscopy using liquid lens technology. Proc.SPIE. https://doi.org/10.1117/12.2252992

Kayvan Forouhesh, T., P. Sendy, et al. (2018). Finite difference time domain modeling of wavefront aberrations in bone using second harmonic generation microscopy. Proc.SPIE. https://doi.org/10.1117/12.2290376

Kayvan, T., K. Peter, et al. (2017). Modelling of optical aberrations caused by light propagation in mouse cranial bone using second harmonic generation imaging. Proc.SPIE. https://doi.org/10.1117/12.2253080

Keller, C. C., G. C. Davenport, et al. (2006). "Suppression of Prostaglandin E2 by Malaria Parasite Products and Antipyretics Promotes Overproduction of Tumor Necrosis Factor–α: Association with the Pathogenesis of Childhood Malarial Anemia." The Journal of Infectious Diseases 193(10): 1384-1393. https://doi.org/10.1086/503047

Kempf, A., S. M. Song, et al. (2019). "A potassium channel β-subunit couples mitochondrial electron transport to sleep." Nature 568(7751): 230-234. https://doi.org/10.1038/s41586-019-1034-5

Kerruth, S., C. Coates, et al. (2019). "The kinetic mechanisms of fast-decay red-fluorescent genetically encoded calcium indicators." Journal of Biological Chemistry 294(11): 3934-3946. https://doi.org/10.1074/jbc.RA118.004543

Khibnik, L. A., N. X. Tritsch, et al. (2014). "A Direct Projection from Mouse Primary Visual Cortex to Dorsomedial Striatum." PLOS ONE 9(8): e104501. https://doi.org/10.1371/journal.pone.0104501

Kieu, K., S. Mehravar, et al. (2013). "Label-free multi-photon imaging using a compact femtosecond fiber laser mode-locked by carbon nanotube saturable absorber." Biomedical Optics Express 4(10): 2187-2195. https://doi.org/10.1364/BOE.4.002187

Kim, B., H. Le, et al. (2020). "High-speed combined reflectance confocal and moxifloxacin based two-photon microscopy." Biomedical Optics Express 11(3): 1555-1567. https://doi.org/10.1364/BOE.385763

Kim, C. K., A. Miri, et al. (2014). "Prolonged, brain-wide expression of nuclear-localized GCaMP3 for functional circuit mapping." Frontiers in Neural Circuits 8. https://doi.org/10.3389/fncir.2014.00138

Kim, T., N. Shen, et al. "Dendritic and parallel processing of visual threats in the retina control defensive responses." Science Advances 6(47): eabc9920. https://www.science.org/doi/full/10.1126/sciadv.abc9920

Klioutchnikov, A., D. J. Wallace, et al. (2023). "A three-photon head-mounted microscope for imaging all layers of visual cortex in freely moving mice." Nature Methods 20(4): 610-616. https://doi.org/10.1038/s41592-022-01688-9

Kong, C., S. Bobe, et al. (2021). "Multiscale and Multimodal Optical Imaging of the Ultrastructure of Human Liver Biopsies." Frontiers in Physiology 12. https://doi.org/10.3389/fphys.2021.637136

Kong, L., J. Tang, et al. (2015). "Continuous volumetric imaging via an optical phase-locked ultrasound lens." Nature Methods 12(8): 759-762. https://doi.org/10.1038/nmeth.3476

Kosalos, J. G. (1984). Ocean Bottom Imaging. Offshore Technology Conference. https://doi.org/10.4043/4717-MS

Kostadinova, R., A. Montagner, et al. (2012). "GW501516-activated PPARβ/δ promotes liver fibrosis via p38-JNK MAPK-induced hepatic stellate cell proliferation." Cell & Bioscience 2(1): 34. https://doi.org/10.1186/2045-3701-2-34

Kostadinova, R. M., A. R. Nawrocki, et al. (2005). "Tumor necrosis factor alpha and phorbol 12-myristate-13-acetate down-regulate human 11β-hydroxysteroid dehydrogenase type 2 through p50/p50 NF-κB homodimers and Egr-1." The FASEB Journal 19(6): 1-30. https://doi.org/10.1096/fj.04-2820fje

Król, P. M., P. Podziewski, et al. (2023). "Deviation of coordinates of small-dimension holes in fiberboard." Wood Material Science & Engineering 18(4): 1237-1242. https://doi.org/10.1080/17480272.2022.2121661

Król, P. M. and K. Szymona (2023). "Methodology evaluation of computer vision small-dimension hole localization." Wood Material Science & Engineering 18(1): 184-192. https://doi.org/10.1080/17480272.2021.2005140

Krumin, M. and S. Shoham (2008). Characterization of Input-Output Relations in Single Neurons using Spatiotemporal Photo-stimulation. 14th Nordic-Baltic Conference on Biomedical Engineering and Medical Physics, Berlin, Heidelberg, Springer Berlin Heidelberg. https://link.springer.com/chapter/10.1007/978-3-540-69367-3_101

Kuchibhotla, K. V., J. V. Gill, et al. (2017). "Parallel processing by cortical inhibition enables context-dependent behavior." Nature Neuroscience 20(1): 62-71. https://doi.org/10.1038/nn.4436

Kumar, S., A. Singh, et al. (2016). "Saturation Dynamics Measures Absolute Cross Section and Generates Contrast within a Neuron." Biophys J 111(6): 1328-1336. https://doi.org/10.1016/j.bpj.2016.06.044

Kunchur, N. N. and L. B. Mostaço-Guidolin (2022). "Development of an image classification pipeline for atherosclerotic plaques assessment using supervised machine learning." BMC Bioinformatics 23(1): 542. https://doi.org/10.1186/s12859-022-05059-1

Kwang-Hee, I. and K. H. David (2010). "Evaluation and Application of T-Ray Nondestructive Characterization of FRP Composite Materials." 비파괴검사학회지 30(5): 429-436. https://www.dbpia.co.kr/Journal/articleDetail?nodeId=NODE02213827

Kwon, S. E., H. Yang, et al. (2016). "Sensory and decision-related activity propagate in a cortical feedback loop during touch perception." Nature Neuroscience 19(9): 1243-1249. https://doi.org/10.1038/nn.4356

Kwon, T., A. Merchán-Pérez, et al. (2018). "Ultrastructural, Molecular and Functional Mapping of GABAergic Synapses on Dendritic Spines and Shafts of Neocortical Pyramidal Neurons." Cerebral Cortex 29(7): 2771-2781. https://doi.org/10.1093/cercor/bhy143

Lalanne, T., J. Oyrer, et al. (2016). "Synapse-specific expression of calcium-permeable AMPA receptors in neocortical layer 5." The Journal of Physiology 594(4): 837-861. https://doi.org/10.1113/JP271394

Lambert, J. T., T. C. Hill, et al. (2017). "Protracted and asynchronous accumulation of PSD95-family MAGUKs during maturation of nascent dendritic spines." Developmental Neurobiology 77(10): 1161-1174. https://doi.org/10.1002/dneu.22503

Laprell, L., C. Schulze, et al. (2021). "The role of microglia membrane potential in chemotaxis." Journal of Neuroinflammation 18(1): 21. https://doi.org/10.1186/s12974-020-02048-0

Lars, R., H. Iván Coto, et al. (2022). "Multiphoton microscopy for label-free multicolor imaging of peripheral nerve." Journal of Biomedical Optics 27(5): 056501. https://doi.org/10.1117/1.JBO.27.5.056501

Laviv, T., B. B. Kim, et al. (2016). "Simultaneous dual-color fluorescence lifetime imaging with novel red-shifted fluorescent proteins." Nature Methods 13(12): 989-992. https://doi.org/10.1038/nmeth.4046

Leila, B. M.-G., C. T. K. Alex, et al. (2014). Evaluating collagen morphology and pathological lipid deposition using multiphoton image statistics. Proc.SPIE. https://doi.org/10.1117/12.2038232

Letourneau, J. J., J. Liu, et al. (2009). "Synthesis and initial evaluation of novel, non-peptidic antagonists of the αv-integrins αvβ3 and αvβ5." Bioorganic & Medicinal Chemistry Letters 19(2): 352-355. https://doi.org/10.1016/j.bmcl.2008.11.074

Levene, M. J. and T. H. Chia (2009). Microprisms for In Vivo Multiphoton Microscopy of Cortex. Advances in Imaging, Vancouver, Optica Publishing Group. https://pubmed.ncbi.nlm.nih.gov/19494189/

Li, J., L. Wang, et al. (2021) "Study on Aberration Correction of Adaptive Optics Based on Convolutional Neural Network." Photonics 8 DOI: 10.3390/photonics8090377. https://doi.org/10.3390/photonics8090377

Li, L., H. Y. Song, et al. (2015). "Correlation of secreted protein acidic and rich in cysteine with diabetic nephropathy." Int J Clin Exp Med 8(8): 12746-12755. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4612873/

Li, L.-y., X. R. Xiong, et al. (2014). "Differential Receptive Field Properties of Parvalbumin and Somatostatin Inhibitory Neurons in Mouse Auditory Cortex." Cerebral Cortex 25(7): 1782-1791. https://doi.org/10.1093/cercor/bht417

Li, M., D. Cabrera-Garcia, et al. (2021). "Alcohol reduces the activity of somatostatin interneurons in the mouse prefrontal cortex: A neural basis for its disinhibitory effect?" Neuropharmacology 188: 108501. https://doi.org/10.1016/j.neuropharm.2021.108501

Li, M., M. Mao, et al. (2023). "Different scan areas affect the detection rates of diabetic retinopathy lesions by high-speed ultra-widefield swept-source optical coherence tomography angiography." Frontiers in Endocrinology 14. https://doi.org/10.3389/fendo.2023.1111360

Li, N., T.-W. Chen, et al. (2015). "A motor cortex circuit for motor planning and movement." Nature 519(7541): 51-56. https://doi.org/10.1038/nature14178

Li, S., X. Deng, et al. (2022). "Bright Near-Infrared π-Conjugated Oligomer Nanoparticles for Deep-Brain Three-Photon Microscopy Excited at the 1700 nm Window in Vivo." ACS Nano 16(8): 12480-12487. https://doi.org/10.1021/acsnano.2c03813

Li, X. and Q. Wang (2015). 3D Imaging System of Two-Photon Excitation Laser Scanning Microscopy. 2015 Fifth International Conference on Instrumentation and Measurement, Computer, Communication and Control (IMCCC). https://ieeexplore.ieee.org/abstract/document/7405879

Li, Y. B., C. Sodja, et al. (2023). "Angiogenesis driven extracellular matrix remodeling of 3D bioprinted vascular networks." Bioprinting 30: e00258. https://doi.org/10.1016/j.bprint.2023.e00258

Lien, A. and M. Scanziani (2011). "In vivo Labeling of Constellations of Functionally Identified Neurons for Targeted in vitro Recordings." Frontiers in Neural Circuits 5. https://doi.org/10.3389/fncir.2011.00016

Lim, K. G., F. Tonelli, et al. (2011). "FTY720 Analogues as Sphingosine Kinase 1 Inhibitors: ENZYME INHIBITION KINETICS, ALLOSTERISM, PROTEASOMAL DEGRADATION, AND ACTIN REARRANGEMENT IN MCF-7 BREAST CANCER CELLS." Journal of Biological Chemistry 286(21): 18633-18640. https://doi.org/10.1074/jbc.M111.220756

Lin, J., Z. Cheng, et al. (2020). "Jitter suppression for resonant galvo based high-throughput laser scanning systems." Optics Express 28(18): 26414-26420. https://doi.org/10.1364/OE.402883

Lin, R.-L., H. N. Frazier, et al. (2022). "Sensitivity of the S1 neuronal calcium network to insulin and Bay-K 8644 in vivo: Relationship to gait, motivation, and aging processes." Aging Cell 21(7): e13661. https://doi.org/10.1111/acel.13661

Liu, M., B. Gu, et al. (2020). "Binary Organic Nanoparticles with Bright Aggregation-Induced Emission for Three-Photon Brain Vascular Imaging." Chemistry of Materials 32(15): 6437-6443. https://doi.org/10.1021/acs.chemmater.0c01577

Liu, R., A. Suzuki, et al. (2006). "Intrinsic and extrinsic erythropoietin enhances neuroprotection against ischemia and reperfusion injury in vitro." Journal of Neurochemistry 96(4): 1101-1110. https://doi.org/10.1111/j.1471-4159.2005.03597.x

Livnat, N., O. Sarig-Nadir, et al. (2007). A Hydrogel-Based Nerve Regeneration Conduit with Sub-Micrometer Feature Control. 2007 3rd International IEEE/EMBS Conference on Neural Engineering. https://ieeexplore.ieee.org/abstract/document/4227227

Looger, L. L. and O. Griesbeck (2012). "Genetically encoded neural activity indicators." Current Opinion in Neurobiology 22(1): 18-23. https://doi.org/10.1016/j.conb.2011.10.024

Lu, J. y. and J. F. Greenleaf (1990). Evaluation of a nondiffracting transducer for tissue characterization. IEEE Symposium on Ultrasonics. https://ieeexplore.ieee.org/abstract/document/171474

Lu, R., Y. Liang, et al. (2020). "Rapid mesoscale volumetric imaging of neural activity with synaptic resolution." Nature Methods 17(3): 291-294. https://doi.org/10.1038/s41592-020-0760-9

Lu, W., K. Ji, et al. (2014). "Bone tissue engineering by using a combination of polymer/Bioglass composites with human adipose-derived stem cells." Cell and Tissue Research 356(1): 97-107. https://doi.org/10.1007/s00441-013-1770-z

Luca, G., S. S. Adam, et al. (2022). "Dendritic Compartmentalization of Learning-Related Plasticity." eneuro 9(3): ENEURO.0060-0022.2022. https://doi.org/10.1523/ENEURO.0060-22.2022

Lumpkin, E. A. and A. J. Hudspeth (1995). "Detection of Ca2+ entry through mechanosensitive channels localizes the site of mechanoelectrical transduction in hair cells." Proceedings of the National Academy of Sciences 92(22): 10297-10301. https://doi.org/10.1073/pnas.92.22.10297

Ma, X., D. A. Johnson, et al. (2023). "In vivo photopharmacology with a caged mu opioid receptor agonist drives rapid changes in behavior." Nature Methods 20(5): 682-685. https://doi.org/10.1038/s41592-023-01819-w

Maldonado, P. P., A. Nuno-Perez, et al. (2021). "Oxytocin Shapes Spontaneous Activity Patterns in the Developing Visual Cortex by Activating Somatostatin Interneurons." Current Biology 31(2): 322-333.e325. https://doi.org/10.1016/j.cub.2020.10.028

Mao, T., D. H. O'Connor, et al. (2008). "Characterization and Subcellular Targeting of GCaMP-Type Genetically-Encoded Calcium Indicators." PLOS ONE 3(3): e1796. https://doi.org/10.1371/journal.pone.0001796

Marco, A., L. Tuan, et al. (2017). "Epi-detecting label-free multimodal imaging platform using a compact diode-pumped femtosecond solid-state laser." Journal of Biomedical Optics 22(9): 091517. https://doi.org/10.1117/1.JBO.22.9.091517

Marcott, C., G. M. Story, et al. (1997). Photoacoustic Depth Profiling, Dynamic Rheo-optics, and Spectroscopic Imaging Microscopy of Polymers by Step-Scanning FT-IR Spectrometry. Progress in Fourier Transform Spectroscopy, Vienna, Springer Vienna. https://link.springer.com/chapter/10.1007/978-3-7091-6840-0_19

Marik, S. A., O. Olsen, et al. (2016). "Physiological role for amyloid precursor protein in adult experience-dependent plasticity." Proceedings of the National Academy of Sciences 113(28): 7912-7917. https://doi.org/10.1073/pnas.1604299113

Marra, V., Jemima J. Burden, et al. (2012). "A Preferentially Segregated Recycling Vesicle Pool of Limited Size Supports Neurotransmission in Native Central Synapses." Neuron 76(3): 579-589. https://doi.org/10.1016/j.neuron.2012.08.042

Martin, S. M., G. S. O'Brien, et al. (2010). "Wallerian degeneration of zebrafish trigeminal axons in the skin is required for regeneration and developmental pruning." Development 137(23): 3985-3994. https://doi.org/10.1242/dev.053611

Martinelli, S., E. A. Anderzhanova, et al. (2021). "Stress-primed secretory autophagy promotes extracellular BDNF maturation by enhancing MMP9 secretion." Nature Communications 12(1): 4643. https://doi.org/10.1038/s41467-021-24810-5

Marvin, J. S., E. R. Schreiter, et al. (2011). "A genetically encoded, high-signal-to-noise maltose sensor." Proteins: Structure, Function, and Bioinformatics 79(11): 3025-3036. https://doi.org/10.1002/prot.23118

Matter, C., M. Pribadi, et al. (2009). "Delta-catenin is required for the maintenance of neural structure and function in mature cortex in vivo." Neuron 64(3): 320-327. https://pubmed.ncbi.nlm.nih.gov/19914181/

Maxim, D. and P. Alexander (2017). Development and design of up-to-date laser scanning two-photon microscope using in neuroscience. Proc.SPIE. https://doi.org/10.1117/12.2267160

Mayrhofer, J. M., F. Haiss, et al. (2015). "Design and performance of an ultra-flexible two-photon microscope for in vivo research." Biomedical Optics Express 6(11): 4228-4237. https://doi.org/10.1364/BOE.6.004228

Megumi, K., F. Yu, et al. (2017). "Locomotion Induces Stimulus-Specific Response Enhancement in Adult Visual Cortex." The Journal of Neuroscience 37(13): 3532. https://doi.org/10.1523/JNEUROSCI.3760-16.2017

Meiling, Z. and K. Sung Eun (2023). "Interneuron-targeted disruption of &lt;em&gt;SYNGAP1&lt;/em&gt; alters sensory representations in the neocortex and impairs sensory learning." The Journal of Neuroscience: JN-RM-1997-1922. https://pubmed.ncbi.nlm.nih.gov/37558489/

Merkel, R., J. Dittmann, et al. (2016). Resource-efficient latent fingerprint age estimation for Adhoc crime scene forensics: Quality assessment of flat bed scans and statistical features. 2016 Sixth International Conference on Image Processing Theory, Tools and Applications (IPTA). https://ieeexplore.ieee.org/abstract/document/7820999

Michael, S. D. S., C. T. K. Alex, et al. (2009). A single-photon fluorescence and multi-photon spectroscopic study of atherosclerotic lesions. Proc.SPIE. https://www.spie.org/Publications/Proceedings/Paper/10.1117/12.840500?SSO=1

Mike, D. M., Y. Patrick, et al. (2019). "Radiation Force as a Physical Mechanism for Ultrasonic Neurostimulation of the &lt;em&gt;Ex Vivo&lt;/em&gt; Retina." The Journal of Neuroscience 39(32): 6251. https://doi.org/10.1523/JNEUROSCI.2394-18.2019

Miller, C. B., C. A. Morgan, et al. (1998). "Storage lipids of the copepod Calanus Jinmarchicus from Georges Bank and the Gulf of Maine." Limnology and Oceanography 43(3): 488-497. https://doi.org/10.4319/lo.1998.43.3.0488

Min, Z., W. Qiang, et al. (2009). "Lentivirus-Mediated sFlt-1 Gene Fragment Transfer Suppresses Retinal Neovascularization." Current Eye Research 34(5): 401-410. https://doi.org/10.1080/02713680902862971

Minge, D., C. Domingos, et al. (2021). "Heterogeneity and Development of Fine Astrocyte Morphology Captured by Diffraction-Limited Microscopy." Frontiers in Cellular Neuroscience 15. https://doi.org/10.3389/fncel.2021.669280

Miri, A., K. Daie, et al. (2010). "Regression-Based Identification of Behavior-Encoding Neurons During Large-Scale Optical Imaging of Neural Activity at Cellular Resolution." Journal of Neurophysiology 105(2): 964-980. https://doi.org/10.1152/jn.00702.2010

Mohr, M. A., D. Bushey, et al. (2020). "jYCaMP: an optimized calcium indicator for two-photon imaging at fiber laser wavelengths." Nature Methods 17(7): 694-697. https://doi.org/10.1038/s41592-020-0835-7

Molina, R. S., J. King, et al. (2020). "High throughput instrument to screen fluorescent proteins under two-photon excitation." Biomedical Optics Express 11(12): 7192-7203. https://doi.org/10.1364/BOE.409353

Mongeon, R., V. Venkatachalam, et al. (2016). "Cytosolic NADH-NAD+ Redox Visualized in Brain Slices by Two-Photon Fluorescence Lifetime Biosensor Imaging." Antioxidants & Redox Signaling 25(10): 553-563. https://doi.org/10.1089/ars.2015.6593

Morrison, A. H., M. Scheeler, et al. (2012). "Quantifying the Bicoid morphogen gradient in living fly embryos." Cold Spring Harb Protoc 1(4): 398-406. https://doi.org/10.1101/pdb.top068536

Mostaço-Guidolin, L. B. and T.-L. Hackett (2015). Deciphering airway remodeling in asthma: Application of multimodal nonlinear optical microscopy. Optics in the Life Sciences, Vancouver, Optica Publishing Group. https://doi.org/10.1364/NTM.2015.NT2C.6

Mostaço-Guidolin, L. B., A. C. T. Ko, et al. (2011). "Evaluation of texture parameters for the quantitative description of multimodal nonlinear optical images from atherosclerotic rabbit arteries." Physics in Medicine & Biology 56(16): 5319. https://iopscience.iop.org/article/10.1088/0031-9155/56/16/016/meta

Mostaço-Guidolin, L. B., A. C. T. Ko, et al. (2013). "Collagen morphology and texture analysis: from statistics to classification." Scientific Reports 3(1): 2190. https://doi.org/10.1038/srep02190

Mostaço-Guidolin, L. B., E. K. Kohlenberg, et al. (2014). "Quantitative Nonlinear Optical Assessment of Atherosclerosis Progression in Rabbits." Analytical Chemistry 86(13): 6346-6354. https://doi.org/10.1021/ac5005635

Mostaço-Guidolin, L. B., M. S. D. Smith, et al. (2019). "Fractal dimension and directional analysis of elastic and collagen fiber arrangement in unsectioned arterial tissues affected by atherosclerosis and aging." Journal of Applied Physiology 126(3): 638-646. https://doi.org/10.1152/japplphysiol.00497.2018

Mostany, R., T. G. Chowdhury, et al. (2010). "Local Hemodynamics Dictate Long-Term Dendritic Plasticity in Peri-Infarct Cortex." The Journal of Neuroscience 30(42): 14116-14126. https://doi.org/10.1523/JNEUROSCI.3908-10.2010

Mostany, R., A. Miquelajauregui, et al. (2015). Two-Photon Excitation Microscopy and Its Applications in Neuroscience. Advanced Fluorescence Microscopy: Methods and Protocols. P. J. Verveer. New York, NY, Springer New York: 25-42. https://doi.org/10.1007/978-1-4939-2080-8_2

Moura, C. C., K. N. Bourdakos, et al. (2019). "Live-imaging of Bioengineered Cartilage Tissue using Multimodal Non-linear Molecular Imaging." Scientific Reports 9(1): 5561. https://doi.org/10.1038/s41598-019-41466-w

Mu, H., X.-M. Zhang, et al. (2009). "Effect of high glucose concentration on VEGF and PEDF expression in cultured retinal Müller cells." Molecular Biology Reports 36(8): 2147-2151. https://doi.org/10.1007/s11033-008-9428-8

Murakoshi, H. and A. C. E. Shibata (2017). "ShadowY: a dark yellow fluorescent protein for FLIM-based FRET measurement." Scientific Reports 7(1): 6791. https://doi.org/10.1038/s41598-017-07002-4

Murakoshi, H., A. C. E. Shibata, et al. (2015). "A dark green fluorescent protein as an acceptor for measurement of Förster resonance energy transfer." Scientific Reports 5(1): 15334. https://doi.org/10.1038/srep15334

Murakoshi, H., H. H. Ueda, et al. (2023). "In vivo three- and four-photon fluorescence microscopy using a 1.8 µm femtosecond fiber laser system." Biomedical Optics Express 14(1): 326-334. https://doi.org/10.1364/BOE.477322

Nakahata, Y., J. Nabekura, et al. (2016). "Dual observation of the ATP-evoked small GTPase activation and Ca2+ transient in astrocytes using a dark red fluorescent protein." Scientific Reports 6(1): 39564. https://doi.org/10.1038/srep39564

Nanammal, V. and J. Venugopalakrishnan (2022). An Efficient Method for Secured Data Communication using Chaos Encryption Algorithm. 2022 International Conference on Innovative Computing, Intelligent Communication and Smart Electrical Systems (ICSES). https://ieeexplore.ieee.org/abstract/document/9914064

Narizhneva, N. V., V. J. Byers-Ward, et al. (2004). "Molecular and Functional Differences Induced in Thrombospondin-1 by the Single Nucleotide Polymorphism Associated with the Risk of Premature, Familial Myocardial Infarction *." Journal of Biological Chemistry 279(20): 21651-21657. https://doi.org/10.1074/jbc.M311090200

Narizhneva, N. V., O. V. Razorenova, et al. (2005). "Thrombospondin-1 up-regulates expression of cell adhesion molecules and promotes monocyte binding to endothelium." Faseb J 19(9): 1158-1160. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1569946/

Nguyen, Q.-T., J. Driscoll, et al. (2009). MPScope 2.0: A Computer System for Two-Photon Laser Scanning Microscopy with Concurrent Plasma-Mediated Ablation and Electrophysiology, CRC Press/Taylor &amp; Francis, Boca Raton (FL). https://europepmc.org/article/nbk/nbk20235#impact

Nguyen, Q.-T., P. S. Tsai, et al. (2006). "MPScope: A versatile software suite for multiphoton microscopy." Journal of Neuroscience Methods 156(1): 351-359. https://doi.org/10.1016/j.jneumeth.2006.03.001

Nicholas, A. S., B. Christina, et al. (2017). "Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines." eneuro 4(5): ENEURO.0207-0217.2017. https://doi.org/10.1523/ENEURO.0207-17.2017

Nieh, E. H., M. Schottdorf, et al. (2021). "Geometry of abstract learned knowledge in the hippocampus." Nature 595(7865): 80-84. https://doi.org/10.1038/s41586-021-03652-7

Niemeyer, J. E., P. Gadamsetty, et al. (2022). "Seizures initiate in zones of relative hyperexcitation in a zebrafish epilepsy model." Brain 145(7): 2347-2360. https://doi.org/10.1093/brain/awac073

Nöbauer, T., O. Skocek, et al. (2017). "Video rate volumetric Ca2+ imaging across cortex using seeded iterative demixing (SID) microscopy." Nature Methods 14(8): 811-818. https://doi.org/10.1038/nmeth.4341

Nomura, Y., H. Murakoshi, et al. (2020). "Short-wavelength, ultrafast thulium-doped fiber laser system for three-photon microscopy." OSA Continuum 3(6): 1428-1435. https://doi.org/10.1364/OSAC.395410

Oda, R., J. Shou, et al. (2022). "Direct visualization of general anesthetic propofol on neurons by stimulated Raman scattering microscopy." iScience 25(3): 103936. https://doi.org/10.1016/j.isci.2022.103936

Ohotski, J., H. Rosen, et al. (2014). "Sphingosine kinase 2 prevents the nuclear translocation of sphingosine 1-phosphate receptor-2 and tyrosine 416 phosphorylated c-Src and increases estrogen receptor negative MDA-MB-231 breast cancer cell growth: The role of sphingosine 1-phosphate receptor-4." Cellular Signalling 26(5): 1040-1047. https://doi.org/10.1016/j.cellsig.2014.01.023

Oliveira, A. F. and R. Yasuda (2013). "An Improved Ras Sensor for Highly Sensitive and Quantitative FRET-FLIM Imaging." PLOS ONE 8(1): e52874. https://doi.org/10.1371/journal.pone.0052874

Oliver, B., K. Peter, et al. (2015). "Functional Microarchitecture of the Mouse Dorsal Inferior Colliculus Revealed through &lt;em&gt;In Vivo&lt;/em&gt; Two-Photon Calcium Imaging." The Journal of Neuroscience 35(31): 10927. https://doi.org/10.1523/JNEUROSCI.0103-15.2015

Olson, E., M. J. Levene, et al. (2016). Multiphoton Microscopy with Clearing for Renal Pathology. Biomedical Optics 2016, Fort Lauderdale, Florida, Optica Publishing Group. https://doi.org/10.1364/TRANSLATIONAL.2016.TTu4B.5

Olson, E., M. J. Levene, et al. (2018). Fast, High-Quality Histology of Cleared Tissue Samples by Polygon-Based Multiphoton Microscopy. Biophotonics Congress: Biomedical Optics Congress 2018 (Microscopy/Translational/Brain/OTS), Hollywood, Florida, Optica Publishing Group. https://doi.org/10.1364/TRANSLATIONAL.2018.JW3A.18

Ouzounov, D. G., D. R. Rivera, et al. (2013). "Miniature varifocal objective lens for endomicroscopy." Optics Letters 38(16): 3103-3106. https://doi.org/10.1364/OL.38.003103

Ouzounov, D. G., D. R. Rivera, et al. (2013). "Dual modality endomicroscope with optical zoom capability." Biomedical Optics Express 4(9): 1494-1503. https://doi.org/10.1364/BOE.4.001494

Ouzounov, D. G., T. Wang, et al. (2017). "In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain." Nature Methods 14(4): 388-390. https://doi.org/10.1038/nmeth.4183

Ouzounov, D. G., T. Wang, et al. (2019). "GCaMP6 ΔF/F dependence on the excitation wavelength in 3-photon and 2-photon microscopy of mouse brain activity." Biomedical Optics Express 10(7): 3343-3352. https://doi.org/10.1364/BOE.10.003343

Owald, D., J. Felsenberg, et al. (2015). "Activity of Defined Mushroom Body Output Neurons Underlies Learned Olfactory Behavior in Drosophila." Neuron 86(2): 417-427. https://doi.org/10.1016/j.neuron.2015.03.025

Ozden, I., H. M. Lee, et al. (2008). "Identification and Clustering of Event Patterns From In Vivo Multiphoton Optical Recordings of Neuronal Ensembles." Journal of Neurophysiology 100(1): 495-503. https://doi.org/10.1152/jn.01310.2007

Packer, A. M., D. S. Peterka, et al. (2012). "Two-photon optogenetics of dendritic spines and neural circuits." Nature Methods 9(12): 1202-1205. https://doi.org/10.1038/nmeth.2249

Padmashri, R., A. Suresh, et al. (2015). "Motor-Skill Learning Is Dependent on Astrocytic Activity." Neural Plasticity 2015: 938023. https://doi.org/10.1155/2015/938023

Pagès, S., M. Cane, et al. (2015). "Single cell electroporation for longitudinal imaging of synaptic structure and function in the adult mouse neocortex in vivo." Frontiers in Neuroanatomy 9. https://doi.org/10.3389/fnana.2015.00036

Panniello, M., S. A. C. Limal, et al. (2023). Imaging Somatosensory Cortex in Rodents. Somatosensory Research Methods. N. P. Holmes. New York, NY, Springer US: 373-396. https://link.springer.com/protocol/10.1007/978-1-0716-3068-6_17

Pashkovski, S. L., G. Iurilli, et al. (2020). "Structure and flexibility in cortical representations of odour space." Nature 583(7815): 253-258. https://doi.org/10.1038/s41586-020-2451-1

Paukert, M. and D. E. Bergles (2012). "Reduction of motion artifacts during in vivo two-photon imaging of brain through heartbeat triggered scanning." The Journal of Physiology 590(13): 2955-2963. https://doi.org/10.1113/jphysiol.2012.228114

Paul, A. R., R. P. Chowdhury, et al. (2020). "Unusual Metastases to Diaphragm and Spleen from Adenocarcinoma of Lung Detected by 18F-FDG PET/CT Imaging: A Case Report." Journal of Oncology Research 1(3): 1-3. https://doi.org/10.30564/jor.v1i3.1586

Peng, H., J. Tang, et al. (2014). "Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis." Nature Communications 5(1): 4342. https://doi.org/10.1038/ncomms5342

Peng, L. and B. Zhuang (2016). A media resources sharing system based on DLNA. 2016 First IEEE International Conference on Computer Communication and the Internet (ICCCI). https://ieeexplore.ieee.org/abstract/document/7778910

Perry, J. D., R. A. Goldberg, et al. (2002). "Bovine Hydroxyapatite Orbital Implant: A Preliminary Report." Ophthalmic Plastic & Reconstructive Surgery 18(4). https://journals.lww.com/op-rs/abstract/2002/07000/bovine_hydroxyapatite_orbital_implant__a.7.aspx

Peters, A. J., S. X. Chen, et al. (2014). "Emergence of reproducible spatiotemporal activity during motor learning." Nature 510(7504): 263-267. https://doi.org/10.1038/nature13235

Pietri, T., S. A. Romano, et al. (2017). "The Emergence of the Spatial Structure of Tectal Spontaneous Activity Is Independent of Visual Inputs." Cell Reports 19(5): 939-948. https://doi.org/10.1016/j.celrep.2017.04.015

Pilger, C., H. Hachmeister, et al. (2015). SI-CARS: CARS microscopy beyond the diffraction limit by structured illumination. Asia Communications and Photonics Conference 2015, Hong Kong, Optica Publishing Group. https://doi.org/10.1364/ACPC.2015.ASu2A.160

Pilger, C., J. Pospíšil, et al. (2021). "Super-resolution fluorescence microscopy by line-scanning with an unmodified two-photon microscope." Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 379(2199): 20200300. https://doi.org/10.1098/rsta.2020.0300

Pisano, F., M. Pisanello, et al. (2019). "Depth-resolved fiber photometry with a single tapered optical fiber implant." Nature Methods 16(11): 1185-1192. https://doi.org/10.1038/s41592-019-0581-x

Pradoldej, S., L. G. Jenna, et al. (2023). "Targeting Astrocyte Signaling Alleviates Cerebrovascular and Synaptic Function Deficits in a Diet-Based Mouse Model of Small Cerebral Vessel Disease." The Journal of Neuroscience 43(10): 1797. https://doi.org/10.1523/JNEUROSCI.1333-22.2023

Prsa, M., G. L. Galiñanes, et al. (2017). "Rapid Integration of Artificial Sensory Feedback during Operant Conditioning of Motor Cortex Neurons." Neuron 93(4): 929-939. https://doi.org/10.1016/j.neuron.2017.01.023

Prsa, M., K. Morandell, et al. (2019). "Feature-selective encoding of substrate vibrations in the forelimb somatosensory cortex." Nature 567(7748): 384-388. https://doi.org/10.1038/s41586-019-1015-8

Puhl, C. J., W. Wefelmeyer, et al. (2023). "Cholinergic Stimulation Modulates the Functional Composition of CA3 Cell Types in the Hippocampus." The Journal of Neuroscience 43(27): 4972-4983. https://doi.org/10.1523/JNEUROSCI.0966-22.2023

Qian, Y., K. D. Piatkevich, et al. (2019). "A genetically encoded near-infrared fluorescent calcium ion indicator." Nature Methods 16(2): 171-174. https://doi.org/10.1038/s41592-018-0294-6

Qin, Y., L. Qiao, et al. (2018). "Bidimensional empirical mode decomposition method for image processing in sensing system." Computers & Electrical Engineering 68: 215-224. https://doi.org/10.1016/j.compeleceng.2018.03.033

Rajapaksha, P., Z. Wang, et al. (2016). "Labeling and analysis of chicken taste buds using molecular markers in oral epithelial sheets." Scientific Reports 6(1): 37247. https://doi.org/10.1038/srep37247

Rakhilin, N., A. Garrett, et al. (2019). "An intravital window to image the colon in real time." Nature Communications 10(1): 5647. https://doi.org/10.1038/s41467-019-13699-w

Ranganathan, G. N., P. F. Apostolides, et al. (2018). "Active dendritic integration and mixed neocortical network representations during an adaptive sensing behavior." Nature Neuroscience 21(11): 1583-1590. https://doi.org/10.1038/s41593-018-0254-6

Ranson, A., E. Broom, et al. (2019). "Top-Down Suppression of Sensory Cortex in an NMDAR Hypofunction Model of Psychosis." Schizophrenia Bulletin 45(6): 1349-1357. https://doi.org/10.1093/schbul/sby190

Reiner, B. C. and A. Dunaevsky (2015). "Deficit in Motor Training-Induced Clustering, but Not Stabilization, of New Dendritic Spines in fmr1 Knock-Out Mice." PLOS ONE 10(5): e0126572. https://doi.org/10.1371/journal.pone.0126572

Renninger, S. L. and M. B. Orger (2013). "Two-photon imaging of neural population activity in zebrafish." Methods 62(3): 255-267. https://doi.org/10.1016/j.ymeth.2013.05.016

Reynolds, S., T. Abrahamsson, et al. (2017). "ABLE: An Activity-Based Level Set Segmentation Algorithm for Two-Photon Calcium Imaging Data." eneuro 4(5): ENEURO.0012-0017.2017. https://doi.org/10.1523/ENEURO.0012-17.2017

Rivera, D. R., C. M. Brown, et al. (2012). "Multifocal multiphoton endoscope." Optics Letters 37(8): 1349-1351. https://doi.org/10.1364/OL.37.001349

Rivers, L. E., K. M. Young, et al. (2008). "PDGFRA/NG2 glia generate myelinating oligodendrocytes and piriform projection neurons in adult mice." Nature Neuroscience 11(12): 1392-1401. https://doi.org/10.1038/nn.2220

Robinson, B. G., J. R. Bunzow, et al. (2017). "Desensitized D2 autoreceptors are resistant to trafficking." Scientific Reports 7(1): 4379. https://doi.org/10.1038/s41598-017-04728-z

Robles, E., N. P. Fields, et al. (2021). "The zebrafish visual system transmits dimming information via multiple segregated pathways." Journal of Comparative Neurology 529(3): 539-552. https://doi.org/10.1002/cne.24964

Rose, P., A. Klioutchnikov, et al. (2022). "Measurement of arbitrary scan patterns for correction of imaging distortions in laser scanning microscopy." Biomedical Optics Express 13(7): 3983-3992. https://doi.org/10.1364/BOE.454155

Rosenegger, D. G., C. H. T. Tran, et al. (2014). "A High Performance, Cost-Effective, Open-Source Microscope for Scanning Two-Photon Microscopy that Is Modular and Readily Adaptable." PLOS ONE 9(10): e110475. https://doi.org/10.1371/journal.pone.0110475

Roth, R. H., Y. Zhang, et al. (2017). "Dynamic imaging of AMPA receptor trafficking in vitro and in vivo." Current Opinion in Neurobiology 45: 51-58. https://doi.org/10.1016/j.conb.2017.03.008

Ryan, T. M., A. J. Hinojosa, et al. (2020). "Correction of z-motion artefacts to allow population imaging of synaptic activity in behaving mice." The Journal of Physiology 598(10): 1809-1827. https://doi.org/10.1113/JP278957

Salas, V., J. Sánchez-Torres, et al. (2005). "Characterisation of tyrosine-phosphorylation-defective calmodulin mutants." Protein Expression and Purification 41(2): 384-392. https://doi.org/10.1016/j.pep.2005.01.004

Salinas-Birt, A., X. Zhu, et al. (2023). "Constraints of vigilance-dependent noradrenergic signaling to mouse cerebellar Bergmann glia." Glia 71(6): 1451-1465. https://doi.org/10.1002/glia.24350

Sam, V., M. D. Richard Torres, et al. (2011). "Multiphoton fluorescence, second harmonic generation, and fluorescence lifetime imaging of whole cleared mouse organs." Journal of Biomedical Optics 16(10): 106009. https://doi.org/10.1117/1.3641992

Sammons, R. P., C. Clopath, et al. (2018). "Size-Dependent Axonal Bouton Dynamics following Visual Deprivation In Vivo." Cell Reports 22(3): 576-584. https://doi.org/10.1016/j.celrep.2017.12.065

Sanchez, D., C. M. Mueller, et al. (2009). "Pancreatic regenerating gene I and acinar cell differentiation: influence on cellular lineage." Pancreas 38(5): 572-577. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2702698/

Sandra, J. K., H. O. Daniel, et al. (2014). "Structural Plasticity within the Barrel Cortex during Initial Phases of Whisker-Dependent Learning." The Journal of Neuroscience 34(17): 6078. https://doi.org/10.1523/JNEUROSCI.4919-12.2014

Santisakultarm, T. P., C. Q. Paduano, et al. (2014). "Stalled cerebral capillary blood flow in mouse models of essential thrombocythemia and polycythemia vera revealed by in vivo two‐photon imaging." Journal of Thrombosis and Haemostasis 12(12): 2120-2130. https://doi.org/10.1111/jth.12738

Saunders, A., I. A. Oldenburg, et al. (2015). "A direct GABAergic output from the basal ganglia to frontal cortex." Nature 521(7550): 85-89. https://doi.org/10.1038/nature14179

Schiavo, J. K., S. Valtcheva, et al. (2020). "Innate and plastic mechanisms for maternal behaviour in auditory cortex." Nature 587(7834): 426-431. https://doi.org/10.1038/s41586-020-2807-6

Schötz, E.-M., M. Lanio, et al. (2013). "Glassy dynamics in three-dimensional embryonic tissues." Journal of The Royal Society Interface 10(89): 20130726. https://doi.org/10.1098/rsif.2013.0726

Schuetzenberger, A. and A. Borst (2020). "Seeing Natural Images through the Eye of a Fly with Remote Focusing Two-Photon Microscopy." iScience 23(6): 17. https://pubmed.ncbi.nlm.nih.gov/32502966/

Schuh, C. D., D. Haenni, et al. (2016). "Long wavelength multiphoton excitation is advantageous for intravital kidney imaging." Kidney International 89(3): 712-719. https://doi.org/10.1038/ki.2015.323

Seemann, K. M., R. Kiefersauer, et al. (2012). "Optical pH Detection within a Protein Crystal." The Journal of Physical Chemistry B 116(33): 9873-9881. https://doi.org/10.1021/jp2103512

Shabanov, P. D., A. A. Lebedev, et al. (2013). "Influences of Intrauterine Ethanol on the Maturation of the Monoaminergic Systems in the Developing Rat Brain." Neuroscience and Behavioral Physiology 43(8): 951-956. https://doi.org/10.1007/s11055-013-9834-9

Sharma, K., G. R. J. Gordon, et al. (2020). "Heterogeneity of Sensory-Induced Astrocytic Ca2+ Dynamics During Functional Hyperemia." Frontiers in Physiology 11. https://doi.org/10.3389/fphys.2020.611884

Sharma, Y., C. Agarwal, et al. (2001). "Inhibitory effect of silibinin on ligand binding to erbB1 and associated mitogenic signaling, growth, and DNA synthesis in advanced human prostate carcinoma cells." Molecular Carcinogenesis 30(4): 224-236. https://doi.org/10.1002/mc.1032

Shaun, A. E., A. M. Samuel, et al. (2022). Longitudinal multiphoton microscopy of neural structure using a diamond Raman laser and Yb fiber amplifier. Proc.SPIE. https://doi.org/10.1117/12.2610074

Shcherbakova, D. M., M. Baloban, et al. (2015). "Near-infrared fluorescent proteins engineered from bacterial phytochromes." Curr Opin Chem Biol 27: 52-63. https://doi.org/10.1016/j.cbpa.2015.06.005

Shin, K. S., A. T. Francis, et al. (2019). "Intraoperative assessment of skull base tumors using stimulated Raman scattering microscopy." Scientific Reports 9(1): 20392. https://doi.org/10.1038/s41598-019-56932-8

Shinichiro, T., Y. Maya, et al. (2015). "Structure–Function Relationships between Aldolase C/Zebrin II Expression and Complex Spike Synchrony in the Cerebellum." The Journal of Neuroscience 35(2): 843. https://doi.org/10.1523/JNEUROSCI.2170-14.2015

Siegle, J. H., G. J. Hale, et al. (2015). "Neural ensemble communities: open-source approaches to hardware for large-scale electrophysiology." Current Opinion in Neurobiology 32: 53-59. https://doi.org/10.1523/JNEUROSCI.2170-14.2015

Simons, S. B., Y. Escobedo, et al. (2009). "Regional differences in hippocampal calcium handling provide a cellular mechanism for limiting plasticity." Proceedings of the National Academy of Sciences 106(33): 14080-14084. https://doi.org/10.1073/pnas.0904775106

Sinefeld, D., H. P. Paudel, et al. (2015). "Adaptive optics in multiphoton microscopy: comparison of two, three and four photon fluorescence." Optics Express 23(24): 31472-31483. https://doi.org/10.1364/OE.23.031472

Sinefeld, D., H. P. Paudel, et al. (2015). Adaptive optics in three-photon fluorescence microscopy. 2015 Conference on Lasers and Electro-Optics (CLEO). https://ieeexplore.ieee.org/abstract/document/7184221

Sinefeld, D., T. Wang, et al. (2016). Three-photon fluorescence adaptive optics for in-vivo mouse brain imaging. 2016 Conference on Lasers and Electro-Optics (CLEO). https://ieeexplore.ieee.org/abstract/document/7787410

Sinefeld, D., F. Xia, et al. (2022). In-Vivo Mouse Brain Imaging using Three-Photon Fluorescence Adaptive Optics. 2022 IEEE Photonics Conference (IPC). https://ieeexplore.ieee.org/abstract/document/9975625

Singh, R. P., C. Agarwal, et al. (2003). "Inositol hexaphosphate inhibits growth, and induces G1 arrest and apoptotic death of prostate carcinoma DU145 cells: modulation of CDKI-CDK-cyclin and pRb-related protein-E2F complexes." Carcinogenesis 24(3): 555-563. https://doi.org/10.1093/carcin/24.3.555

Singh, R. P., A. K. Tyagi, et al. (2002). "Silymarin inhibits growth and causes regression of established skin tumors in SENCAR mice via modulation of mitogen-activated protein kinases and induction of apoptosis." Carcinogenesis 23(3): 499-510. https://doi.org/10.1093/carcin/23.3.499

Siniscalchi, M. J., H. Wang, et al. (2019). "Enhanced Population Coding for Rewarded Choices in the Medial Frontal Cortex of the Mouse." Cerebral Cortex 29(10): 4090-4106. https://doi.org/10.1093/cercor/bhy292

Sinsimer, K. S., J. J. Lee, et al. (2013). "Germ plasm anchoring is a dynamic state that requires persistent trafficking." Cell Rep 5(5): 1169-1177. https://doi.org/10.1016/j.celrep.2013.10.045

Slomp, M., L. L. Koekkoek, et al. (2023). "Free-choice high-fat diet consumption reduces lateral hypothalamic GABAergic activity, without disturbing neural response to sucrose drinking in mice." Front Neurosci 17(1219569). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10434857/

Smirnov, M. S., P. R. Evans, et al. (2017). "Automated Remote Focusing, Drift Correction, and Photostimulation to Evaluate Structural Plasticity in Dendritic Spines." PLOS ONE 12(1): e0170586. https://doi.org/10.1371/journal.pone.0170586

Smirnov, M. S., T. R. Garrett, et al. (2018). "An open-source tool for analysis and automatic identification of dendritic spines using machine learning." PLOS ONE 13(7): e0199589. https://doi.org/10.1371/journal.pone.0199589

Smith, G. B., B. Hein, et al. (2018). "Distributed network interactions and their emergence in developing neocortex." Nature Neuroscience 21(11): 1600-1608. https://doi.org/10.1038/s41593-018-0247-5

Smith, S. L. and M. Häusser (2010). "Parallel processing of visual space by neighboring neurons in mouse visual cortex." Nature Neuroscience 13(9): 1144-1149. https://doi.org/10.1038/nn.2620

Smus, J. P., E. Ludlow, et al. (2017). "Coherent anti-Stokes Raman scattering (CARS) spectroscopy in Caenorhabditis elegans and Globodera pallida: evidence for an ivermectin-activated decrease in lipid stores." Pest Management Science 73(12): 2550-2558. https://doi.org/10.1002/ps.4707

Sobczyk, A. and K. Svoboda (2007). "Activity-Dependent Plasticity of the NMDA-Receptor Fractional Ca²⁺ Current." Neuron 53(1): 17-24. Sobczyk, A. and K. Svoboda (2007). https://doi.org/10.1016/j.neuron.2006.11.016

Soler-Llavina, G. J. and B. L. Sabatini (2006). "Synapse-specific plasticity and compartmentalized signaling in cerebellar stellate cells." Nature Neuroscience 9(6): 798-806. https://doi.org/10.1038/nn1698

Sonia, P., H. C. Thomas, et al. (2010). "Multiphoton microscopy of cleared mouse organs." Journal of Biomedical Optics 15(3): 036017. https://doi.org/10.1117/1.3454391

Sowa, M., L. Mostaco-Guidolin, et al. (3909). "Nonlinear Optical Measurements of the Artery Wall: Parameters Related to the Progression of Atherosclerosis." Measurement Science Review 9(4): 93-94. https://doi.org/10.2478/v10048-009-0018-2

Stobart, J. L., E. Erlebach, et al. (2023). "Altered hemodynamics and vascular reactivity in a mouse model with severe pericyte deficiency." Journal of Cerebral Blood Flow & Metabolism 43(5): 763-777. https://doi.org/10.1177/0271678X221147366

Stobart, J. L., K. D. Ferrari, et al. (2016). "Long-term In Vivo Calcium Imaging of Astrocytes Reveals Distinct Cellular Compartment Responses to Sensory Stimulation." Cerebral Cortex 28(1): 184-198. https://doi.org/10.1093/cercor/bhw366

Strauss, M., G. Anselmi, et al. (1998). "Carnitine Promotes Heat Shock Protein Synthesis in Adriamycin-induced Cardiomyopathy in a Neonatal Rat Experimental Model." Journal of Molecular and Cellular Cardiology 30(11): 2319-2325. https://doi.org/10.1006/jmcc.1998.0793

Streich, L., J. C. Boffi, et al. (2021). "High-resolution structural and functional deep brain imaging using adaptive optics three-photon microscopy." Nature Methods 18(10): 1253-1258. https://doi.org/10.1038/s41592-021-01257-6

Sturm, J. J., T. Nguyen, et al. (2016). Mapping Auditory Synaptic Circuits with Photostimulation of Caged Glutamate. Auditory and Vestibular Research: Methods and Protocols. B. Sokolowski. New York, NY, Springer New York: 525-537. https://link.springer.com/protocol/10.1007/978-1-4939-3615-1_30

Stuurman, N. and J. R. Swedlow (2012). "Software tools, data structures, and interfaces for microscope imaging." Cold Spring Harb Protoc 1(1): 50-61. https://pubmed.ncbi.nlm.nih.gov/22194261/

Sun, J., J. Li, et al. (2015). "Role of bone morphogenetic protein-2 in osteogenic differentiation of mesenchymal stem cells." Mol Med Rep 12(3): 4230-4237. https://doi.org/10.3892/mmr.2015.3954

Sun, X. R., A. Badura, et al. (2013). "Fast GCaMPs for improved tracking of neuronal activity." Nature Communications 4(1): 2170. https://doi.org/10.1038/ncomms3170

Svara, F., D. Förster, et al. (2022). "Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain." Nature Methods 19(11): 1357-1366. https://doi.org/10.1038/s41592-022-01621-0

Szatmari, E. M., C. Moran, et al. (2021). "ADAP1/Centaurin-α1 Negatively Regulates Dendritic Spine Function and Memory Formation in the Hippocampus." eneuro 8(1): ENEURO.0111-0120.2020. https://doi.org/10.1523/ENEURO.0111-20.2020

Takahashi, N., C. Ebner, et al. (2020). "Active dendritic currents gate descending cortical outputs in perception." Nature Neuroscience 23(10): 1277-1285. https://doi.org/10.1038/s41593-020-0677-8

Tamara, S.-H., I. N. María, et al. (2015). "Channel-Mediated Lactate Release by K&lt;sup&gt;+&lt;/sup&gt;-Stimulated Astrocytes." The Journal of Neuroscience 35(10): 4168. https://doi.org/10.1523/JNEUROSCI.5036-14.2015

Tao, Y., S. G. Simon, et al. (2009). Imaging living hair cells within the cochlear epithelium of mice using two-photon microscopy. Proc.SPIE. https://doi.org/10.1117/12.809789

Tao, Y., G. Simon Shang, et al. (2010). "Calcium imaging of inner ear hair cells within the cochlear epithelium of mice using two-photon microscopy." Journal of Biomedical Optics 15(1): 016002. https://doi.org/10.1117/1.3290799

Tatti, R., K. Bhaukaurally, et al. (2014). "A population of glomerular glutamatergic neurons controls sensory information transfer in the mouse olfactory bulb." Nature Communications 5(1): 3791. https://doi.org/10.1038/ncomms4791

Tehrani, K. F., C. V. Latchoumane, et al. (2019). "Five-dimensional two-photon volumetric microscopy of in-vivo dynamic activities using liquid lens remote focusing." Biomedical Optics Express 10(7): 3591-3604. https://doi.org/10.1364/BOE.10.003591

Teresa, A. M. and J. L. Michael (2012). "Singlet gradient index lens for deep in vivo multiphoton microscopy." Journal of Biomedical Optics 17(2): 021106. https://doi.org/10.1117/1.JBO.17.2.021106

Tervo, D. Gowanlock R., B.-Y. Hwang, et al. (2016). "A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons." Neuron 92(2): 372-382. https://doi.org/10.1016/j.neuron.2016.09.021

Thériault, G., Y. De Koninck, et al. (2013). "Extended depth of field microscopy for rapid volumetric two-photon imaging." Optics Express 21(8): 10095-10104. https://doi.org/10.1364/OE.21.010095

Thestrup, T., J. Litzlbauer, et al. (2014). "Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes." Nature Methods 11(2): 175-182. https://doi.org/10.1038/nmeth.2773

Theyel, B. B., D. A. Llano, et al. (2011). "In vitro imaging using laser photostimulation with flavoprotein autofluorescence." Nature Protocols 6(4): 502-508. https://doi.org/10.1038/nprot.2011.315

Thiele, Tod R., Joseph C. Donovan, et al. (2014). "Descending Control of Swim Posture by a Midbrain Nucleus in Zebrafish." Neuron 83(3): 679-691. https://doi.org/10.1016/j.neuron.2014.04.018

Thomas, H. C., Z. Joseph, et al. (2007). Multiphoton fluorescence imaging of NADH to quantify metabolic changes in epileptic tissue in vitro. Proc.SPIE. https://doi.org/10.1117/12.696928

Thomas, T. J. S., D. Giovanni, et al. (2023). "Topographically Localized Modulation of Tectal Cell Spatial Tuning by Complex Natural Scenes." eneuro 10(1): ENEURO.0223-0222.2022. https://doi.org/10.1523/ENEURO.0223-22.2022

Thorn, P. (2014). Measurement of Dynamic F-Actin Changes During Exocytosis. Exocytosis and Endocytosis. A. I. Ivanov. New York, NY, Springer New York: 423-431. https://link.springer.com/protocol/10.1007/978-1-4939-0944-5_29

Tian, S., J. I. E. Chen, et al. (2011). "ENHANCEMENT OF SOLUBILITY AND EMULSIFYING PROPERTIES OF SOY PROTEIN ISOLATES BY GLUCOSE CONJUGATION." Journal of Food Processing and Preservation 35(1): 80-95. https://doi.org/10.1111/j.1745-4549.2009.00456.x

Tian, X., C. Wang, et al. (2018). "Arenobufagin is a novel isoform-specific probe for sensing human sulfotransferase 2A1." Acta Pharmaceutica Sinica B 8(5): 784-794. https://doi.org/10.1016/j.apsb.2018.07.007

Titze, B., C. Genoud, et al. (2018). "SBEMimage: Versatile Acquisition Control Software for Serial Block-Face Electron Microscopy." Frontiers in Neural Circuits 12. https://doi.org/10.3389/fncir.2018.00054

Torres, R., S. Vesuna, et al. (2013). "High-Resolution, 2- and 3-Dimensional Imaging of Uncut, Unembedded Tissue Biopsy Samples." Archives of Pathology & Laboratory Medicine 138(3): 395-402. https://doi.org/10.5858/arpa.2013-0094-OA

Tran, C. H. T., A. G. George, et al. (2020). "Seizures elevate gliovascular unit Ca2+ and cause sustained vasoconstriction." JCI Insight 5(19): 136469. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7566700/

Tran, C. H. T. and G. R. Gordon (2015). "Acute two-photon imaging of the neurovascular unit in the cortex of active mice." Frontiers in Cellular Neuroscience 9. https://doi.org/10.3389/fncel.2015.00011

Tu, X., R. Yasuda, et al. (2020). "Rac1 is a downstream effector of PKCα in structural synaptic plasticity." Scientific Reports 10(1): 1777. https://doi.org/10.1038/s41598-020-58610-6

Tucker, S. S., J. T. Giblin, et al. (2023). "Optical coherence tomography-based design for a real-time motion corrected scanning microscope." Optics Letters 48(14): 3805-3808. https://doi.org/10.1364/OL.490087

Tyagi, A. K., R. P. Singh, et al. (2002). "Silibinin Strongly Synergizes Human Prostate Carcinoma DU145 Cells to Doxorubicin-induced Growth Inhibition, G2-M Arrest, and Apoptosis1." Clinical Cancer Research 8(11): 3512-3519. https://aacrjournals.org/clincancerres/article/8/11/3512/289111/Silibinin-Strongly-Synergizes-Human-Prostate

Urban, B. E., L. Xiao, et al. (2018). "Imaging neuronal structure dynamics using 2-photon super-resolution patterned excitation reconstruction microscopy." Journal of Biophotonics 11(3): e201700171. https://doi.org/10.1002/jbio.201700171

Valdivia, L. E., R. M. Young, et al. (2011). "Lef1-dependent Wnt/β-catenin signalling drives the proliferative engine that maintains tissue homeostasis during lateral line development." Development 138(18): 3931-3941. https://doi.org/10.1242/dev.062695

Vasalauskaite, A., J. E. Morgan, et al. (2019). "Plasticity in Adult Mouse Visual Cortex Following Optic Nerve Injury." Cerebral Cortex 29(4): 1767-1777. https://doi.org/10.1093/cercor/bhy347

Velasco, M. G. M. and M. J. Levene (2014). "In vivo two-photon microscopy of the hippocampus using glass plugs." Biomedical Optics Express 5(6): 1700-1708. https://doi.org/10.1364/BOE.5.001700

Vendrell-Llopis, N., C. Fang, et al. (2022). "Diverse operant control of different motor cortex populations during learning." Current Biology 32(7): 1616-1622.e1615. https://doi.org/10.1016/j.cub.2022.02.006

Veruki, M. L., Y. Zhou, et al. (2019). "Extrasynaptic NMDA Receptors on Rod Pathway Amacrine Cells: Molecular Composition, Activation, and Signaling." The Journal of Neuroscience 39(4): 627-650. https://doi.org/10.1523/JNEUROSCI.2267-18.2018

Villegas, R., S. M. Martin, et al. (2012). "Dynamics of degeneration and regeneration in developing zebrafish peripheral axons reveals a requirement for extrinsic cell types." Neural Development 7(1): 19. https://doi.org/10.1186/1749-8104-7-19

Vishniakou, I. and J. D. Seelig (2021). "Differentiable model-based adaptive optics for two-photon microscopy." Optics Express 29(14): 21418-21427. https://doi.org/10.1364/OE.424344

Vishniakou, I. and J. D. Seelig (2023). "Differentiable optimization of the Debye-Wolf integral for light shaping and adaptive optics in two-photon microscopy." Optics Express 31(6): 9526-9542. https://doi.org/10.1364/OE.482387

Vlasits, Anna L., Ryan D. Morrie, et al. (2016). "A Role for Synaptic Input Distribution in a Dendritic Computation of Motion Direction in the Retina." Neuron 89(6): 1317-1330. https://doi.org/10.1016/j.neuron.2016.02.020

Voigt, F. F., A. M. Reuss, et al. (2023). "Reflective multi-immersion microscope objectives inspired by the Schmidt telescope." Nature Biotechnology. https://doi.org/10.1038/s41587-023-01717-8

Vukosavljevic, B., M. Hittinger, et al. (2019). "Vibrational spectroscopic imaging and live cell video microscopy for studying differentiation of primary human alveolar epithelial cells." Journal of Biophotonics 12(6): e201800052. https://doi.org/10.1002/jbio.201800052

Vysokovsky, A., N. Rosenberg, et al. (2006). "Effect of four missense mutations in the factor XIII A-subunit gene on protein stability: studies with recombinant proteins." Blood Coagulation & Fibrinolysis 17(2). https://journals.lww.com/bloodcoagulation/abstract/2006/03000/effect_of_four_missense_mutations_in_the_factor.6.aspx

Walach, E., C. N. Liu, et al. (1986). "Quantitative Tissue Characterzation Based on Pulsed-Echo Ultrasound Scans." IEEE Transactions on Biomedical Engineering BME-33(7): 637-643. https://ieeexplore.ieee.org/abstract/document/4122360

Wang, F., K. Wang, et al. (2020). "Neural circuitry linking mating and egg laying in Drosophila females." Nature 579(7797): 101-105. https://doi.org/10.1038/s41586-020-2055-9

Wang, F., Y. Yuan, et al. (2020). "Design and implementation of the galvanometer scanning system for reflectance confocal and stimulated Raman scattering microscopy." Chinese Optics Letters 18(12): 121703. https://doi.org/10.1364/COL.18.121703

Wang, K., Y. Pan, et al. (2022). "3-photon fluorescence and third-harmonic generation imaging of myelin sheaths in mouse digital skin in vivo: A comparative study." Journal of Innovative Optical Health Sciences 15(01): 2250003. https://doi.org/10.1142/S1793545822500031

Wang, K., W. Zhang, et al. "Comparison of the emission wavelengths by a single fluorescent dye on in vivo 3-photon imaging of mouse brains." Journal of Innovative Optical Health Sciences 0(0): 2340002. https://doi.org/10.1142/S1793545823400023

Wang, L., W. Yan, et al. (2018). "Aberration correction for improving the image quality in STED microscopy using the genetic algorithm." Nanophotonics 7(12): 1971-1980. https://doi.org/10.1515/nanoph-2018-0133

Wang, T., D. G. Ouzounov, et al. (2018). "Three-photon imaging of mouse brain structure and function through the intact skull." Nature Methods 15(10): 789-792. https://doi.org/10.1038/s41592-018-0115-y

Wang, T.-M., L. C. Holzhausen, et al. (2014). "Imaging an optogenetic pH sensor reveals that protons mediate lateral inhibition in the retina." Nature Neuroscience 17(2): 262-268. https://doi.org/10.1038/nn.3627

Wang, Y., W. Wen, et al. (2016). "Measurement of absorption spectrum of deuterium oxide (D2O) and its application to signal enhancement in multiphoton microscopy at the 1700-nm window." Applied Physics Letters 108(2). https://doi.org/10.1063/1.4939970

Wei, Z., X. Liu, et al. (2022). "Pixel-level multimodal fusion deep networks for predicting subcellular organelle localization from label-free live-cell imaging." Frontiers in Genetics 13. https://doi.org/10.3389/fgene.2022.1002327

Weifu, L., Z. Dandan, et al. (2017). An automated detection for axonal boutons in vivo two-photon imaging of mouse. Proc.SPIE. https://doi.org/10.1117/12.2267573

Weiler, S., J. Bauer, et al. (2018). "High-yield in vitro recordings from neurons functionally characterized in vivo." Nature Protocols 13(6): 1275-1293. https://doi.org/10.1038/nprot.2018.026

Werner, K. M., L. J. Perez, et al. (2014). "<em>Caenorhabditis elegans</em> Recognizes a Bacterial Quorum-sensing Signal Molecule through the AWC^ON Neuron *." Journal of Biological Chemistry 289(38): 26566-26573. https://doi.org/10.1074/jbc.M114.573832

Wilms, C. D. and M. Häusser (2015). "Reading out a spatiotemporal population code by imaging neighbouring parallel fibre axons in vivo." Nature Communications 6(1): 6464. https://doi.org/10.1038/ncomms7464

Wilson, N. R., J. Schummers, et al. (2013). "Two-way communication with neural networks in vivo using focused light." Nature Protocols 8(6): 1184-1203. https://doi.org/10.1038/nprot.2013.063

Wyatt, R. M., E. Tring, et al. (2012). "Pattern and not magnitude of neural activity determines dendritic spine stability in awake mice." Nature Neuroscience 15(7): 949-951. https://doi.org/10.1038/nn.3134

Xia, F., M. Gevers, et al. (2021). "Short-Wave Infrared Confocal Fluorescence Imaging of Deep Mouse Brain with a Superconducting Nanowire Single-Photon Detector." ACS Photonics 8(9): 2800-2810. https://doi.org/10.1021/acsphotonics.1c01018

Xia, F., C. Wu, et al. (2018). "In vivo label-free confocal imaging of the deep mouse brain with long-wavelength illumination." Biomedical Optics Express 9(12): 6545-6555. https://doi.org/10.1364/BOE.9.006545

Xia, F. and C. Xu (2021). In vivo Shortwave Infrared (SWIR) Confocal Fluorescence Imaging of Deep Mouse Brain with a Single-Photon Superconducting Nanowire Detector. Conference on Lasers and Electro-Optics, San Jose, California, Optica Publishing Group. https://doi.org/10.1364/CLEO_AT.2021.AM3C.6

Xie, Q., X. Chen, et al. (2017). "An automated pipeline for bouton, spine, and synapse detection of in vivo two-photon images." BioData Mining 10(1): 40. https://doi.org/10.1186/s13040-017-0161-5

Xin, W., K. E. Schuebel, et al. (2019). "Ventral midbrain astrocytes display unique physiological features and sensitivity to dopamine D2 receptor signaling." Neuropsychopharmacology 44(2): 344-355. https://doi.org/10.1038/s41386-018-0151-4

Xindong, W., M. Ester, et al. (2014). Welcome from the ASONAM 2014 program chairs. 2014 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM). https://www.computer.org/csdl/proceedings-article/asonam/2014/06921534/12OmNxHJ9qZ

Xu, B., X. Yang, et al. (2022). "Real-time correction of transverse dislocation and distortion in probe-based confocal laser endomicroscopy imaging." Optics Communications 522: 128653. https://doi.org/10.1016/j.optcom.2022.128653

Xu, Y. K. T., A. R. Graves, et al. (2023). "Cross-modality supervised image restoration enables nanoscale tracking of synaptic plasticity in living mice." Nature Methods 20(6): 935-944. https://doi.org/10.1038/s41592-023-01871-6

Xue, X., J. Huang, et al. (2020). "YB-1 transferred by gastric cancer exosomes promotes angiogenesis via enhancing the expression of angiogenic factors in vascular endothelial cells." BMC Cancer 20(1): 996. https://doi.org/10.1186/s12885-020-07509-6

Yan, W., Y. Yang, et al. (2017). "Coherent optical adaptive technique improves the spatial resolution of STED microscopy in thick samples." Photonics Research 5(3): 176-181. https://doi.org/10.1364/PRJ.5.000176

Yang, H., S. E. Kwon, et al. (2016). "Origins of choice-related activity in mouse somatosensory cortex." Nature Neuroscience 19(1): 127-134. https://doi.org/10.1038/nn.4183

Yang, S., S. Adhikari, et al. (2013). "Multi-color ultrafast laser platform for nonlinear optical imaging based on independently tunable optical parametric oscillators." Applied Physics B 111(4): 617-625. https://doi.org/10.1007/s00340-013-5381-x

Yang, X. B., H. I. Roach, et al. (2001). "Human osteoprogenitor growth and differentiation on synthetic biodegradable structures after surface modification." Bone 29(6): 523-531. https://doi.org/10.1016/S8756-3282(01)00617-2

Yang, X. B., D. Webb, et al. (2006). "Evaluation of human bone marrow stromal cell growth on biodegradable polymer/Bioglass^®composites." Biochemical and Biophysical Research Communications 342(4): 1098-1107. https://doi.org/10.1016/j.bbrc.2006.02.021

Yang, Y., B. Yao, et al. (2016). "Two-Photon Laser Scanning Stereomicroscopy for Fast Volumetric Imaging." PLOS ONE 11(12): e0168885. https://doi.org/10.1371/journal.pone.0168885

Ye, L., M. A. Haroon, et al. (2017). "Comparison of GCaMP3 and GCaMP6f for studying astrocyte Ca2+ dynamics in the awake mouse brain." PLOS ONE 12(7): e0181113. https://doi.org/10.1371/journal.pone.0181113

Yi-Shan, T., C. Yen-Rei, et al. (2015). "Mystery Case: Intracranial hemorrhage in adult vein of Galen malformation." Neurology 85(13): e94. https://doi.org/10.1212/WNL.0000000000001966

Yongxiao, L. and L. Woei Ming (2016). PScan 1.0: flexible software framework for polygon based multiphoton microscopy. Proc.SPIE. https://doi.org/10.1117/12.2242954

Yoshida, Y., Z. Wang, et al. (2019). "Bitter taste receptor T2R7 and umami taste receptor subunit T1R1 are expressed highly in Vimentin-negative taste bud cells in chickens." Biochemical and Biophysical Research Communications 511(2): 280-286. https://doi.org/10.1016/j.bbrc.2019.02.021

Yuan, Q., J.-J. Li, et al. (2014). "Biological characteristics of rat dorsal root ganglion cell and human vascular endothelial cell in mono- and co-culture." Molecular Biology Reports 41(10): 6949-6956. https://doi.org/10.1007/s11033-014-3581-z

Yuan, Y., N. Shah, et al. (2021). "Assessing fatty acid-induced lipotoxicity and its therapeutic potential in glioblastoma using stimulated Raman microscopy." Scientific Reports 11(1): 7422. https://doi.org/10.1038/s41598-021-86789-9

Yun, Z., L. Dainan, et al. (2020). "Activity and Cytosolic Na+ Regulate Synaptic Vesicle Endocytosis." The Journal of Neuroscience 40(32): 6112. https://doi.org/10.1523/JNEUROSCI.0119-20.2020

Yuto, H., M. Wenjie, et al. (2017). "Luciferase shRNA Presents off-Target Effects on Voltage-Gated Ion Channels in Mouse Hippocampal Pyramidal Neurons." eneuro 4(5): ENEURO.0186-0117.2017. https://doi.org/10.1523/ENEURO.0186-17.2017

Zengyou, Y., H. C. Robert, et al. (2019). "Estrogen-Dependent Functional Spine Dynamics in Neocortical Pyramidal Neurons of the Mouse." The Journal of Neuroscience 39(25): 4874. https://doi.org/10.1523/JNEUROSCI.2772-18.2019

Zhang, H. and D. Hu (2010). "A SCANNER BASED PALMPRINT VERIFICATION SYSTEM FOR CIVIL APPLICATION." International Journal of Information Acquisition 07(03): 259-268. https://doi.org/10.1142/S021987891000218X

Zhang, Q., Y. Yang, et al. (2023). "Retinal microvascular and neuronal pathologies probed in vivo by adaptive optical two-photon fluorescence microscopy." eLife 12: e84853. https://doi.org/10.7554/eLife.84853

Zhang, W., L. Zhang, et al. (2016). "Hyperactive somatostatin interneurons contribute to excitotoxicity in neurodegenerative disorders." Nature Neuroscience 19(4): 557-559. https://doi.org/10.1038/nn.4257

Zhang, Y., M. Rózsa, et al. (2023). "Fast and sensitive GCaMP calcium indicators for imaging neural populations." Nature 615(7954): 884-891. https://doi.org/10.1038/s41586-023-05828-9

Zhao, G., T. D. Etherton, et al. (2005). "Anti-inflammatory effects of polyunsaturated fatty acids in THP-1 cells." Biochemical and Biophysical Research Communications 336(3): 909-917. https://doi.org/10.1016/j.bbrc.2005.08.204

Zhao, M., M. Cai, et al. (2016). "Recombinant expression, refolding, purification and characterization of Pseudomonas aeruginosa protease IV in Escherichia coli." Protein Expression and Purification 126: 69-76. https://doi.org/10.1016/j.pep.2016.05.019

Zhong, H., G. M. Sia, et al. (2009). "Subcellular dynamics of type II PKA in neurons." Neuron 62(3): 363-374. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2702487/

Zhou, H., Z. Xie, et al. (2021). "Behavioural impairments after exposure of neonatal mice to propofol are accompanied by reductions in neuronal activity in cortical circuitry." British Journal of Anaesthesia 126(6): 1141-1156. https://doi.org/10.1016/j.bja.2021.01.017

Zhou, J., W. Deng, et al. (2023). "Methcathinone Increases Visually-evoked Neuronal Activity and Enhances Sensory Processing Efficiency in Mice." Neuroscience Bulletin 39(4): 602-616. https://doi.org/10.1007/s12264-022-00965-z

Zhou, L., J. Flores, et al. (2019). "Methylene blue inhibits Caspase-6 activity, and reverses Caspase-6-induced cognitive impairment and neuroinflammation in aged mice." Acta Neuropathologica Communications 7(1): 210. https://doi.org/10.1186/s40478-019-0856-6

Zhu, M. and W. E. Fahl (2001). "Functional Characterization of Transcription Regulators That Interact with the Electrophile Response Element." Biochemical and Biophysical Research Communications 289(1): 212-219. https://doi.org/10.1006/bbrc.2001.5944

Zhu, P., T. Frank, et al. (2013). "Equalization of odor representations by a network of electrically coupled inhibitory interneurons." Nature Neuroscience 16(11): 1678-1686. https://doi.org/10.1038/nn.3528

Zhuang, Z., C. He, et al. (2019). "Refractive index and pulse broadening characterization using oil immersion and its influence on three-photon microscopy excited at the 1700-nm window." Journal of Biophotonics 12(2): e201800263. https://doi.org/10.1002/jbio.201800263

Zi, X., R. P. Singh, et al. (2000). "Impairment of erbB1 receptor and fluid-phase endocytosis and associated mitogenic signaling by inositol hexaphosphate in human prostate carcinoma DU145 cells." Carcinogenesis 21(12): 2225-2235. https://doi.org/10.1093/carcin/21.12.2225

Zimmermann, M. J. Y., A. Maia Chagas, et al. (2020). "LED Zappelin’: An open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2-photon imaging." HardwareX 8: e00127. https://doi.org/10.1016/j.ohx.2020.e00127

Zito, K., V. Scheuss, et al. (2009). "Rapid Functional Maturation of Nascent Dendritic Spines." Neuron 61(2): 247-258. https://doi.org/10.1016/j.neuron.2008.10.054

Zong, W., H. A. Obenhaus, et al. (2022). "Large-scale two-photon calcium imaging in freely moving mice." Cell 185(7): 1240-1256.e1230. https://doi.org/10.1016/j.cell.2022.02.017

국민석 (2008). "악골 골수염의 처치." 대한치과의사협회지 46(12): 734-741. https://www.dbpia.co.kr/journal/articleDetail?nodeId=NODE01911072&language=ko_KR&hasTopBanner=true

김영복, 민대홍, et al. (2001). "열하중을 받는 복합재료 적층판의 손상에 대한 열-음향방출해석." 비파괴검사학회지 21(3): 261-268. https://www.dbpia.co.kr/Journal/articleDetail?nodeId=NODE02204863

김재훈, 김후식, et al. (2001). Glass/phenol 복합적층판의 저속충격 특성 ( Low Velocity Impact Characteristics of Glass/phenol Composite Laminates ), 대한기계학회. https://koreascience.kr/article/CFKO200123513949540.view?orgId=anpor&hide=breadcrumb,journalinfo

박익근 and 박은수 (1994). "이종재료 접합면의 초음파 비파괴평가기법." 비파괴검사학회지 14(3): 194-205. https://www.dbpia.co.kr/Journal/articleDetail?nodeId=NODE02206663

장경영, 장효성, et al. (2000). "웨이브렛 변환을 이용한 초음파 펄스 에코 신호의 디컨볼루션." 비파괴검사학회지 20(6): 511-520. https://www.dbpia.co.kr/Journal/articleDetail?nodeId=NODE02204953

정계조, 박상기, et al. (2004). "초음파 수침법을 이용한 터빈베어링 Babbitt 금속 박리 검사 기술." 비파괴검사학회지 24(4): 348-353. https://www.dbpia.co.kr/Journal/articleDetail?nodeId=NODE02203741

太田, 光. and 繁. 宮田 (1991). "超音波画像処理におけるSpeckleパターンのRician分布に対する一般化とShannonの信号空間における酔歩問題 : 画像応用." テレビジョン学会技術報告 15(30): 1-8. https://cir.nii.ac.jp/crid/1390001204521877760